Information for 3-GCYTCTCAKYCYT (Motif 4)

A C T G A G T C A G T C A C G T A G T C A G C T A G T C G T C A A C T G A G C T A G T C A G C T A G C T
Reverse Opposite:
C T G A C T G A A C T G C T G A G T A C A C G T A C T G C T G A A C T G C G T A C T A G A C T G A G T C
p-value:1e-10
log p-value:-2.521e+01
Information Content per bp:1.873
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.1 +/- 28.4bp
Average Position of motif in Background40.7 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL002.1_INR/Jaspar

Match Rank:1
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GCYTCTCAKYCYT
-----TCAGTCTT
 A C T G A G T C A G T C A C G T A G T C A G C T A G T C G T C A A C T G A G C T A G T C A G C T A G C T
A C G T A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCYTCTCAKYCYT
GSCTGTCACTCA-
 A C T G A G T C A G T C A C G T A G T C A G C T A G T C G T C A A C T G A G C T A G T C A G C T A G C T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCYTCTCAKYCYT
AGCCACTCAAG---
 A C G T A C T G A G T C A G T C A C G T A G T C A G C T A G T C G T C A A C T G A G C T A G T C A G C T A G C T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCYTCTCAKYCYT
GCTTCC-------
 A C T G A G T C A G T C A C G T A G T C A G C T A G T C G T C A A C T G A G C T A G T C A G C T A G C T
A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0022.1_Gata5_1/Jaspar

Match Rank:5
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GCYTCTCAKYCYT
NTNTTCTTATCAGTNTN
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A G T C A G C T A G T C G T C A A C T G A G C T A G T C A G C T A G C T
G C T A G C A T G T A C A G C T A G C T A T G C C G A T C G A T C G T A A C G T A G T C C G T A T C A G G A C T G C A T G C A T C G T A

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GCYTCTCAKYCYT
AAGCACCTGTCAATAT-
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A G T C A G C T A G T C G T C A A C T G A G C T A G T C A G C T A G C T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCYTCTCAKYCYT
AASCACTCAA----
 A C G T A C T G A G T C A G T C A C G T A G T C A G C T A G T C G T C A A C T G A G C T A G T C A G C T A G C T
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GCYTCTCAKYCYT
--YTGWCADY---
 A C T G A G T C A G T C A C G T A G T C A G C T A G T C G T C A A C T G A G C T A G T C A G C T A G C T
A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GCYTCTCAKYCYT
-NCTGTCAATCAN
 A C T G A G T C A G T C A C G T A G T C A G C T A G T C G T C A A C T G A G C T A G T C A G C T A G C T
A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GCYTCTCAKYCYT
-GCTGTCAA----
 A C T G A G T C A G T C A C G T A G T C A G C T A G T C G T C A A C T G A G C T A G T C A G C T A G C T
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T