Information for 2-TSTGWSCATTAGC (Motif 2)

A C G T A T G C A C G T T C A G C G A T A T G C G T A C C G T A A C G T A G C T C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C C G A T C T G A C G T A C G A T A C T G T A C G G C T A A G T C C G T A A T C G C G T A
p-value:1e-13
log p-value:-3.158e+01
Information Content per bp:1.787
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.6 +/- 22.6bp
Average Position of motif in Background50.6 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0097.1_Lhx6_2/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TSTGWSCATTAGC----
TCCACTAATTAGCGGTT
 A C G T A T G C A C G T T C A G C G A T A T G C G T A C C G T A A C G T A G C T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
G C A T T G A C G A T C T C G A G A T C G A C T T C G A C T G A A G C T A G C T C T G A C T A G A G T C C A T G C T A G C G A T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TSTGWSCATTAGC
---GGCCATTAAC
 A C G T A T G C A C G T T C A G C G A T A T G C G T A C C G T A A C G T A G C T C G T A A C T G A G T C
A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

EVX1/MA0887.1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TSTGWSCATTAGC
---GGTAATTAGC
 A C G T A T G C A C G T T C A G C G A T A T G C G T A C C G T A A C G T A G C T C G T A A C T G A G T C
A C G T A C G T A C G T T C A G T A C G G A C T T C G A T C G A A C G T G A C T C T G A A T C G T A G C

EVX2/MA0888.1/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TSTGWSCATTAGC
---GGTAATTAGC
 A C G T A T G C A C G T T C A G C G A T A T G C G T A C C G T A A C G T A G C T C G T A A C T G A G T C
A C G T A C G T A C G T T A C G T A C G G A C T T G C A T C G A A C G T A G C T C T G A T A C G A T G C

PH0081.1_Pdx1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TSTGWSCATTAGC--
NTGNGCTAATTACCNN
 A C G T A C G T A T G C A C G T T C A G C G A T A T G C G T A C C G T A A C G T A G C T C G T A A C T G A G T C A C G T A C G T
G T C A G A C T A T C G C G T A C T A G A T G C G A C T T G C A G C T A C A G T A C G T C T G A T A G C G A T C A C G T A C G T

HOXB3/MA0903.1/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TSTGWSCATTAGC
---ACTAATTAGC
 A C G T A T G C A C G T T C A G C G A T A T G C G T A C C G T A A C G T A G C T C G T A A C T G A G T C
A C G T A C G T A C G T C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C

HOXA2/MA0900.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TSTGWSCATTAGC
---CCTAATTACC
 A C G T A T G C A C G T T C A G C G A T A T G C G T A C C G T A A C G T A G C T C G T A A C T G A G T C
A C G T A C G T A C G T T A G C T A G C G A C T T G C A T C G A A C G T G A C T G C T A T A G C T A G C

Hoxb5/MA0904.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TSTGWSCATTAGC--
ATGNGCTAATTANCNT
 A C G T A C G T A T G C A C G T T C A G C G A T A T G C G T A C C G T A A C G T A G C T C G T A A C T G A G T C A C G T A C G T
C G T A G A C T C A T G C G T A C T A G A T G C G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A C T G A C G T

PH0060.1_Hoxb5/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TSTGWSCATTAGC--
ATGNGCTAATTANCNT
 A C G T A C G T A T G C A C G T T C A G C G A T A T G C G T A C C G T A A C G T A G C T C G T A A C T G A G T C A C G T A C G T
C G T A G A C T C A T G C G T A C T A G A T G C G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A C T G A C G T

PH0036.1_Gsx2/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TSTGWSCATTAGC--
NTNNGCTAATTANCNT
 A C G T A C G T A T G C A C G T T C A G C G A T A T G C G T A C C G T A A C G T A G C T C G T A A C T G A G T C A C G T A C G T
G T C A G A C T T A G C T C G A C T A G A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C G A G A T C A T G C A G C T