Information for 9-CTTTTTGCCAAAA (Motif 18)

A G T C A C G T A C G T A C G T C A G T C A G T A C T G A T G C A G T C G T C A G T C A G T C A T G C A
Reverse Opposite:
A C G T A C G T A C G T A C G T C T A G A T C G A G T C G T C A G C T A T G C A C G T A C G T A C T A G
p-value:1e-6
log p-value:-1.485e+01
Information Content per bp:1.804
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif14.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.9 +/- 6.6bp
Average Position of motif in Background52.8 +/- 13.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTTTTTGCCAAAA
---CTTGGCAA--
 A G T C A C G T A C G T A C G T C A G T C A G T A C T G A T G C A G T C G T C A G T C A G T C A T G C A
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTTTTTGCCAAAA
---GGTGCCAAGT
 A G T C A C G T A C G T A C G T C A G T C A G T A C T G A T G C A G T C G T C A G T C A G T C A T G C A
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTTTTTGCCAAAA
---CGTGCCAAG-
 A G T C A C G T A C G T A C G T C A G T C A G T A C T G A T G C A G T C G T C A G T C A G T C A T G C A
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

E2F7/MA0758.1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTTTTTGCCAAAA
TTTTCCCGCCAAAA
 A C G T A G T C A C G T A C G T A C G T C A G T C A G T A C T G A T G C A G T C G T C A G T C A G T C A T G C A
C G A T C G A T A G C T A G C T A T G C A T G C A G T C T C A G A G T C A T G C C G T A C G T A G C T A C G T A

PB0145.1_Mafb_2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTTGCCAAAA
ANATTTTTGCAANTN
 A C G T A C G T A G T C A C G T A C G T A C G T C A G T C A G T A C T G A T G C A G T C G T C A G T C A G T C A T G C A
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

E2F8/MA0865.1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTTTTTGCCAAAA
TTTCCCGCCAAA-
 A G T C A C G T A C G T A C G T C A G T C A G T A C T G A T G C A G T C G T C A G T C A G T C A T G C A
G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CTTTTTGCCAAAA
-----TGCCAA--
 A G T C A C G T A C G T A C G T C A G T C A G T A C T G A T G C A G T C G T C A G T C A G T C A T G C A
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----CTTTTTGCCAAAA
NAATTTTATTACCNNN-
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T C A G T C A G T A C T G A T G C A G T C G T C A G T C A G T C A T G C A
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTTGCCAAAA
TTTTATGGCTN---
 A C G T A G T C A C G T A C G T A C G T C A G T C A G T A C T G A T G C A G T C G T C A G T C A G T C A T G C A
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CTTTTTGCCAAAA
CNTGTTTACATA-
 A G T C A C G T A C G T A C G T C A G T C A G T A C T G A T G C A G T C G T C A G T C A G T C A T G C A
A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A A C G T