Information for 9-CAGCGAGGGG (Motif 17)

A T G C T G C A T C A G A G T C A C T G G C T A C A T G C T A G A T C G C T A G
Reverse Opposite:
G A T C T A G C G A T C G T A C C G A T T G A C T C A G A G T C A C G T T A C G
p-value:1e-7
log p-value:-1.615e+01
Information Content per bp:1.544
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif4.18%
Number of Background Sequences with motif729.5
Percentage of Background Sequences with motif1.54%
Average Position of motif in Targets51.6 +/- 22.9bp
Average Position of motif in Background49.0 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC1/MA0696.1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CAGCGAGGGG--
CACAGCGGGGGGTC
 A C G T A C G T A T G C T G C A T C A G A G T C A C T G G C T A C A T G C T A G A T C G C T A G A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

ZIC3/MA0697.1/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CAGCGAGGGG--
NCGCAGCGGGGGGTC
 A C G T A C G T A C G T A T G C T G C A T C A G A G T C A C T G G C T A C A T G C T A G A T C G C T A G A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC4/MA0751.1/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CAGCGAGGGG--
NCNCAGCGGGGGGTC
 A C G T A C G T A C G T A T G C T G C A T C A G A G T C A C T G G C T A C A T G C T A G A T C G C T A G A C G T A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CAGCGAGGGG--
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T A T G C T G C A T C A G A G T C A C T G G C T A C A T G C T A G A T C G C T A G A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CAGCGAGGGG
DCTCAGCAGG---
 A C G T A C G T A C G T A T G C T G C A T C A G A G T C A C T G G C T A C A T G C T A G A T C G C T A G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CAGCGAGGGG
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T A C G T A T G C T G C A T C A G A G T C A C T G G C T A C A T G C T A G A T C G C T A G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAGCGAGGGG
CACAGCAGGGGG
 A C G T A C G T A T G C T G C A T C A G A G T C A C T G G C T A C A T G C T A G A T C G C T A G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CAGCGAGGGG
GAGCACAGCAGGACA
 A C G T A C G T A C G T A C G T A C G T A T G C T G C A T C A G A G T C A C T G G C T A C A T G C T A G A T C G C T A G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CAGCGAGGGG
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T A C G T A T G C T G C A T C A G A G T C A C T G G C T A C A T G C T A G A T C G C T A G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CAGCGAGGGG
CACAGN------
 A C G T A C G T A T G C T G C A T C A G A G T C A C T G G C T A C A T G C T A G A T C G C T A G
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T