Information for 6-CCCHCTGCTGGCTGCC (Motif 9)

G T A C G T A C A G T C G A T C A G T C C G A T A T C G A G T C A C G T A C T G A C T G A G T C A G C T C T A G A T G C A G T C
Reverse Opposite:
A C T G A T C G G A T C C T G A C T A G A G T C A G T C C G T A A C T G A T G C C G T A C T A G C A T G T A C G A C T G A C T G
p-value:1e-11
log p-value:-2.603e+01
Information Content per bp:1.808
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.0 +/- 26.9bp
Average Position of motif in Background74.8 +/- 17.9bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CCCHCTGCTGGCTGCC
TAGCGCCCCCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C A G T C G A T C A G T C C G A T A T C G A G T C A C G T A C T G A C T G A G T C A G C T C T A G A T G C A G T C
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.66
Offset:-8
Orientation:forward strand
Alignment:--------CCCHCTGCTGGCTGCC
CNNBRGCGCCCCCTGSTGGC----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C G T A C A G T C G A T C A G T C C G A T A T C G A G T C A C G T A C T G A C T G A G T C A G C T C T A G A T G C A G T C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCCHCTGCTGGCTGCC
-DCHCAGCAGGRGGCC
 G T A C G T A C A G T C G A T C A G T C C G A T A T C G A G T C A C G T A C T G A C T G A G T C A G C T C T A G A T G C A G T C
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CCCHCTGCTGGCTGCC
ANAGTGCCACCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C G T A C A G T C G A T C A G T C C G A T A T C G A G T C A C G T A C T G A C T G A G T C A G C T C T A G A T G C A G T C
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCCHCTGCTGGCTGCC
CCCCCTGCTGTG----
 G T A C G T A C A G T C G A T C A G T C C G A T A T C G A G T C A C G T A C T G A C T G A G T C A G C T C T A G A T G C A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CCCHCTGCTGGCTGCC
---HCAGCTGDTN---
 G T A C G T A C A G T C G A T C A G T C C G A T A T C G A G T C A C G T A C T G A C T G A G T C A G C T C T A G A T G C A G T C
A C G T A C G T A C G T G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T A C G T A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCCHCTGCTGGCTGCC
-NAACAGCTGG-----
 G T A C G T A C A G T C G A T C A G T C C G A T A T C G A G T C A C G T A C T G A C T G A G T C A G C T C T A G A T G C A G T C
A C G T C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T A C G T A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCCHCTGCTGGCTGCC
-CCTCACCTG------
 G T A C G T A C A G T C G A T C A G T C C G A T A T C G A G T C A C G T A C T G A C T G A G T C A G C T C T A G A T G C A G T C
A C G T T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCCHCTGCTGGCTGCC
---VCAGCTGBNN---
 G T A C G T A C A G T C G A T C A G T C C G A T A T C G A G T C A C G T A C T G A C T G A G T C A G C T C T A G A T G C A G T C
A C G T A C G T A C G T T G A C A T G C C G T A A T C G A T G C C A G T C A T G A C T G A G T C G T A C A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CCCHCTGCTGGCTGCC
----CAGCTGNT----
 G T A C G T A C A G T C G A T C A G T C C G A T A T C G A G T C A C G T A C T G A C T G A G T C A G C T C T A G A T G C A G T C
A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T