Information for 4-CCGCCMTGGCMGCGGC (Motif 4)

A G T C G A T C A T C G A T G C A G T C G T C A A G C T A C T G A C T G A G T C G T C A T A C G A G T C A T C G A C T G A G T C
Reverse Opposite:
A C T G A G T C A T G C A C T G A G T C C A G T A C T G A G T C A G T C C T G A C A G T A C T G A T C G A T G C C A T G C T A G
p-value:1e-13
log p-value:-3.017e+01
Information Content per bp:1.781
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.3 +/- 18.7bp
Average Position of motif in Background42.4 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCGCCMTGGCMGCGGC
TTGCCATGGCAACN--
 A G T C G A T C A T C G A T G C A G T C G T C A A G C T A C T G A C T G A G T C G T C A T A C G A G T C A T C G A C T G A G T C
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCGCCMTGGCMGCGGC
GTTGCCATGGCAACCG-
 A C G T A G T C G A T C A T C G A T G C A G T C G T C A A G C T A C T G A C T G A G T C G T C A T A C G A G T C A T C G A C T G A G T C
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCGCCMTGGCMGCGGC
GTTGCCATGGCAAC---
 A C G T A G T C G A T C A T C G A T G C A G T C G T C A A G C T A C T G A C T G A G T C G T C A T A C G A G T C A T C G A C T G A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCGCCMTGGCMGCGGC
-TACCATAGCAACGGT
 A G T C G A T C A T C G A T G C A G T C G T C A A G C T A C T G A C T G A G T C G T C A T A C G A G T C A T C G A C T G A G T C
A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCGCCMTGGCMGCGGC
GTTGCCATGGCAACM--
 A C G T A G T C G A T C A T C G A T G C A G T C G T C A A G C T A C T G A C T G A G T C G T C A T A C G A G T C A T C G A C T G A G T C
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCGCCMTGGCMGCGGC
---SCCTAGCAACAG-
 A G T C G A T C A T C G A T G C A G T C G T C A A G C T A C T G A C T G A G T C G T C A T A C G A G T C A T C G A C T G A G T C
A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCGCCMTGGCMGCGGC
TTGCCATGGCAACC--
 A G T C G A T C A T C G A T G C A G T C G T C A A G C T A C T G A C T G A G T C G T C A T A C G A G T C A T C G A C T G A G T C
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCGCCMTGGCMGCGGC
-CCGCATAGCAACGGA
 A G T C G A T C A T C G A T G C A G T C G T C A A G C T A C T G A C T G A G T C G T C A T A C G A G T C A T C G A C T G A G T C
A C G T A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CCGCCMTGGCMGCGGC
----NTTGGCANN---
 A G T C G A T C A T C G A T G C A G T C G T C A A G C T A C T G A C T G A G T C G T C A T A C G A G T C A T C G A C T G A G T C
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CCGCCMTGGCMGCGGC
-----TTGGCA-----
 A G T C G A T C A T C G A T G C A G T C G T C A A G C T A C T G A C T G A G T C G T C A T A C G A G T C A T C G A C T G A G T C
A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T