Information for 1-CCACTAGGTGGCAGCA (Motif 1)

G T A C A G T C G T C A T A G C A G C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C G T A T A C G G T A C C T G A
Reverse Opposite:
A G C T A C T G A G T C A C G T A C T G A G T C A G T C G C T A A G T C A G T C A C G T C T G A A T C G A C G T A C T G A C T G
p-value:1e-32
log p-value:-7.371e+01
Information Content per bp:1.834
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.64%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.5 +/- 17.8bp
Average Position of motif in Background8.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.86
Offset:-3
Orientation:reverse strand
Alignment:---CCACTAGGTGGCAGCA-
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T G T A C A G T C G T C A T A G C A G C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C G T A T A C G G T A C C T G A A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---CCACTAGGTGGCAGCA
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T G T A C A G T C G T C A T A G C A G C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C G T A T A C G G T A C C T G A
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-CCACTAGGTGGCAGCA---
GCCASCAGGGGGCGCYVNNG
 A C G T G T A C A G T C G T C A T A G C A G C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C G T A T A C G G T A C C T G A A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.61
Offset:5
Orientation:forward strand
Alignment:CCACTAGGTGGCAGCA
-----AGGTGTCA---
 G T A C A G T C G T C A T A G C A G C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C G T A T A C G G T A C C T G A
A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CCACTAGGTGGCAGCA
-----GGTTGGCAT--
 G T A C A G T C G T C A T A G C A G C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C G T A T A C G G T A C C T G A
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CCACTAGGTGGCAGCA
--AACAGATGGC----
 G T A C A G T C G T C A T A G C A G C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C G T A T A C G G T A C C T G A
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T

SCRT1/MA0743.1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCACTAGGTGGCAGCA
GAGCAACAGGTGGTT---
 A C G T A C G T G T A C A G T C G T C A T A G C A G C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C G T A T A C G G T A C C T G A
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CCACTAGGTGGCAGCA
---CAAGATGGCGGC-
 G T A C A G T C G T C A T A G C A G C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C G T A T A C G G T A C C T G A
A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCACTAGGTGGCAGCA
DCHCAGCAGGRGGCC---
 A C G T A C G T G T A C A G T C G T C A T A G C A G C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C G T A T A C G G T A C C T G A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCACTAGGTGGCAGCA
ATGCAACAGGTGG-----
 A C G T A C G T G T A C A G T C G T C A T A G C A G C T C G T A A C T G C T A G C A G T A C T G A C T G A G T C C G T A T A C G G T A C C T G A
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T