Information for 2-CAGCTGTCAD (Motif 3)

A T G C C G T A T A C G T A G C G C A T A T C G C G A T A T G C G T C A C T G A
Reverse Opposite:
G A C T C A G T T A C G G C T A T A G C C G T A A T C G A T G C G C A T T A C G
p-value:1e-33
log p-value:-7.670e+01
Information Content per bp:1.576
Number of Target Sequences with motif213.0
Percentage of Target Sequences with motif23.25%
Number of Background Sequences with motif4579.7
Percentage of Background Sequences with motif9.58%
Average Position of motif in Targets50.4 +/- 24.5bp
Average Position of motif in Background51.1 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0169.1_Tgif1/Jaspar

Match Rank:1
Score:0.93
Offset:-3
Orientation:reverse strand
Alignment:---CAGCTGTCAD----
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A T G C C G T A T A C G T A G C G C A T A T C G C G A T A T G C G T C A C T G A A C G T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

MEIS2/MA0774.1/Jaspar

Match Rank:2
Score:0.91
Offset:2
Orientation:reverse strand
Alignment:CAGCTGTCAD
--GCTGTCAA
 A T G C C G T A T A C G T A G C G C A T A T C G C G A T A T G C G T C A C T G A
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

PH0102.1_Meis1/Jaspar

Match Rank:3
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---CAGCTGTCAD---
AACGAGCTGTCAATAC
 A C G T A C G T A C G T A T G C C G T A T A C G T A G C G C A T A T C G C G A T A T G C G T C A C T G A A C G T A C G T A C G T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C

PH0170.1_Tgif2/Jaspar

Match Rank:4
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---CAGCTGTCAD---
AACTAGCTGTCAATAC
 A C G T A C G T A C G T A T G C C G T A T A C G T A G C G C A T A T C G C G A T A T G C G T C A C T G A A C G T A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

PH0104.1_Meis2/Jaspar

Match Rank:5
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---CAGCTGTCAD---
AAAGACCTGTCAATAC
 A C G T A C G T A C G T A T G C C G T A T A C G T A G C G C A T A T C G C G A T A T G C G T C A C T G A A C G T A C G T A C G T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---CAGCTGTCAD---
AAGCACCTGTCAATAT
 A C G T A C G T A C G T A T G C C G T A T A C G T A G C G C A T A T C G C G A T A T G C G T C A C T G A A C G T A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

PH0105.1_Meis3/Jaspar

Match Rank:7
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---CAGCTGTCAD---
AATTACCTGTCAATAC
 A C G T A C G T A C G T A T G C C G T A T A C G T A G C G C A T A T C G C G A T A T G C G T C A C T G A A C G T A C G T A C G T
C G T A C T G A C G A T A C G T C T G A A T G C G A T C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G C A G T A C

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.88
Offset:2
Orientation:reverse strand
Alignment:CAGCTGTCAD
--CCTGTCAA
 A T G C C G T A T A C G T A G C G C A T A T C G C G A T A T G C G T C A C T G A
A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---CAGCTGTCAD---
AAAGACCTGTCAATCC
 A C G T A C G T A C G T A T G C C G T A T A C G T A G C G C A T A T C G C G A T A T G C G T C A C T G A A C G T A C G T A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.86
Offset:1
Orientation:forward strand
Alignment:CAGCTGTCAD-
-VGCTGWCAVB
 A T G C C G T A T A C G T A G C G C A T A T C G C G A T A T G C G T C A C T G A A C G T
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C