Information for 12-GTTKCCAWGGCAA (Motif 14)

A T C G G C A T A G C T A C G T G A T C G T A C G C T A C G A T C T A G C T A G T G A C C T G A G C T A
Reverse Opposite:
C G A T G A C T A C T G G A T C G A T C G C T A C G A T C A T G C T A G T G C A T C G A C G T A T A G C
p-value:1e-9
log p-value:-2.168e+01
Information Content per bp:1.597
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.28%
Number of Background Sequences with motif392.2
Percentage of Background Sequences with motif0.82%
Average Position of motif in Targets49.1 +/- 21.4bp
Average Position of motif in Background47.8 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-GTTKCCAWGGCAA
GGTTGCCATGGCAA
 A C G T A T C G G C A T A G C T A C G T G A T C G T A C G C T A C G A T C T A G C T A G T G A C C T G A G C T A
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-GTTKCCAWGGCAA
NGTTGCCATGGCAA
 A C G T A T C G G C A T A G C T A C G T G A T C G T A C G C T A C G A T C T A G C T A G T G A C C T G A G C T A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:3
Score:0.89
Offset:0
Orientation:forward strand
Alignment:GTTKCCAWGGCAA--
GTTGCCATGGCAACM
 A T C G G C A T A G C T A C G T G A T C G T A C G C T A C G A T C T A G C T A G T G A C C T G A G C T A A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:4
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--GTTKCCAWGGCAA-
CGGTTGCCATGGCAAC
 A C G T A C G T A T C G G C A T A G C T A C G T G A T C G T A C G C T A C G A T C T A G C T A G T G A C C T G A G C T A A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:GTTKCCAWGGCAA-
GTTGCCATGGNAAC
 A T C G G C A T A G C T A C G T G A T C G T A C G C T A C G A T C T A G C T A G T G A C C T G A G C T A A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

RFX5/MA0510.2/Jaspar

Match Rank:6
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-GTTKCCAWGGCAA--
NGTTGCCATGGCAACG
 A C G T A T C G G C A T A G C T A C G T G A T C G T A C G C T A C G A T C T A G C T A G T G A C C T G A G C T A A C G T A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:7
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-GTTKCCAWGGCAA--
CGTTGCCATGGCAACN
 A C G T A T C G G C A T A G C T A C G T G A T C G T A C G C T A C G A T C T A G C T A G T G A C C T G A G C T A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-GTTKCCAWGGCAA--
CGTTGCCATGGCAACG
 A C G T A T C G G C A T A G C T A C G T G A T C G T A C G C T A C G A T C T A G C T A G T G A C C T G A G C T A A C G T A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-GTTKCCAWGGCAA--
CGTTGCCATGGCAACN
 A C G T A T C G G C A T A G C T A C G T G A T C G T A C G C T A C G A T C T A G C T A G T G A C C T G A G C T A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GTTKCCAWGGCAA
CTGTTGCTAGGS---
 A C G T A C G T A T C G G C A T A G C T A C G T G A T C G T A C G C T A C G A T C T A G C T A G T G A C C T G A G C T A
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T A C G T