Motif 12

Information for 11-CSGRCCCCGTGCG (Motif 12)

Reverse Opposite:

p-value:	1e-9
log p-value:	-2.226e+01
Information Content per bp:	1.902
Number of Target Sequences with motif	9.0
Percentage of Target Sequences with motif	0.98%
Number of Background Sequences with motif	19.7
Percentage of Background Sequences with motif	0.04%
Average Position of motif in Targets	59.8 +/- 29.5bp
Average Position of motif in Background	62.2 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)	-1.0
Multiplicity (# of sites on avg that occur together)	1.00
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

Mycn/MA0104.3/Jaspar

Match Rank:	1
Score:	0.63
Offset:	3
Orientation:	forward strand
Alignment:	CSGRCCCCGTGCG ---GCCACGTG--

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:	2
Score:	0.63
Offset:	3
Orientation:	forward strand
Alignment:	CSGRCCCCGTGCG ---NCCACGTG--

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:	3
Score:	0.62
Offset:	2
Orientation:	forward strand
Alignment:	CSGRCCCCGTGCG --NNCCACGTGG-

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:	4
Score:	0.62
Offset:	2
Orientation:	forward strand
Alignment:	CSGRCCCCGTGCG --NNCCACGTGG-

PB0043.1_Max_1/Jaspar

Match Rank:	5
Score:	0.61
Offset:	-1
Orientation:	reverse strand
Alignment:	-CSGRCCCCGTGCG-- CCNNANCACGTGGTCN

GLIS2/MA0736.1/Jaspar

Match Rank:	6
Score:	0.61
Offset:	2
Orientation:	forward strand
Alignment:	CSGRCCCCGTGCG--- --GACCCCCCGCGAAG

MAX::MYC/MA0059.1/Jaspar

Match Rank:	7
Score:	0.60
Offset:	3
Orientation:	reverse strand
Alignment:	CSGRCCCCGTGCG- ---ACCACGTGCTC

Hes1/MA1099.1/Jaspar

Match Rank:	8
Score:	0.59
Offset:	3
Orientation:	reverse strand
Alignment:	CSGRCCCCGTGCG ---NNCGCGTGNN

Id2/MA0617.1/Jaspar

Match Rank:	9
Score:	0.59
Offset:	4
Orientation:	reverse strand
Alignment:	CSGRCCCCGTGCG ----TCACGTGC-

MAX/MA0058.3/Jaspar

Match Rank:	10
Score:	0.58
Offset:	3
Orientation:	forward strand
Alignment:	CSGRCCCCGTGCG ---ACCACGTGCT