Information for 9-AGAGGGCCCTCTG (Motif 17)

C G T A A C T G C G T A A C T G A C T G A T C G A T G C G T A C G T A C A C G T A G T C A C G T A T C G
Reverse Opposite:
A T G C C G T A A C T G C G T A A C T G A C T G A T C G A T G C G T A C A G T C C G A T A G T C A C G T
p-value:1e-8
log p-value:-1.855e+01
Information Content per bp:1.854
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif8.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.7 +/- 15.7bp
Average Position of motif in Background35.3 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AGAGGGCCCTCTG--
-----GCCATCTGTT
 C G T A A C T G C G T A A C T G A C T G A T C G A T G C G T A C G T A C A C G T A G T C A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T

PB0052.1_Plagl1_1/Jaspar

Match Rank:2
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---AGAGGGCCCTCTG
NNNGGGGCGCCCCCNN
 A C G T A C G T A C G T C G T A A C T G C G T A A C T G A C T G A T C G A T G C G T A C G T A C A C G T A G T C A C G T A T C G
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.54
Offset:-8
Orientation:reverse strand
Alignment:--------AGAGGGCCCTCTG
TGGCCACCAGGTGGCACTNT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G A C T G A T C G A T G C G T A C G T A C A C G T A G T C A C G T A T C G
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGAGGGCCCTCTG-----
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T C G T A A C T G C G T A A C T G A C T G A T C G A T G C G T A C G T A C A C G T A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:5
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AGAGGGCCCTCTG-
--AGGVNCCTTTGT
 C G T A A C T G C G T A A C T G A C T G A T C G A T G C G T A C G T A C A C G T A G T C A C G T A T C G A C G T
A C G T A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:6
Score:0.51
Offset:5
Orientation:forward strand
Alignment:AGAGGGCCCTCTG--
-----ACCATCTGTT
 C G T A A C T G C G T A A C T G A C T G A T C G A T G C G T A C G T A C A C G T A G T C A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AGAGGGCCCTCTG
NNAGATNVNWATCTN
 A C G T A C G T C G T A A C T G C G T A A C T G A C T G A T C G A T G C G T A C G T A C A C G T A G T C A C G T A T C G
C T A G T G A C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T T A C G

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AGAGGGCCCTCTG-----
-CCNNACCATCTGGCCTN
 C G T A A C T G C G T A A C T G A C T G A T C G A T G C G T A C G T A C A C G T A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

CTCF/MA0139.1/Jaspar

Match Rank:9
Score:0.50
Offset:-8
Orientation:forward strand
Alignment:--------AGAGGGCCCTCTG
TGGCCACCAGGGGGCGCTA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G A C T G A T C G A T G C G T A C G T A C A C G T A G T C A C G T A T C G
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---AGAGGGCCCTCTG
TTGAGTGSTT------
 A C G T A C G T A C G T C G T A A C T G C G T A A C T G A C T G A T C G A T G C G T A C G T A C A C G T A G T C A C G T A T C G
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T