Information for 4-CCAGCAGTGGAGG (Motif 6)

A T G C A G T C C G T A A C T G A T G C C G T A A C T G A G C T A C T G A C T G C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A G T C A G T C C T G A A G T C A C G T A T C G A G T C C G A T A C T G A T C G
p-value:1e-10
log p-value:-2.514e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets77.0 +/- 13.7bp
Average Position of motif in Background60.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF354C/MA0130.1/Jaspar

Match Rank:1
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:CCAGCAGTGGAGG
------GTGGAT-
 A T G C A G T C C G T A A C T G A T G C C G T A A C T G A G C T A C T G A C T G C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCAGCAGTGGAGG
CACAGCAGGGGG--
 A C G T A T G C A G T C C G T A A C T G A T G C C G T A A C T G A G C T A C T G A C T G C G T A A C T G A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCAGCAGTGGAGG-
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A T G C A G T C C G T A A C T G A T G C C G T A A C T G A G C T A C T G A C T G C G T A A C T G A C T G A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCAGTGGAGG------
GCCASCAGGGGGCGCYVNNG
 A C G T A T G C A G T C C G T A A C T G A T G C C G T A A C T G A G C T A C T G A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CCAGCAGTGGAGG
GGCCYCCTGCTGDGH---
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A A C T G A T G C C G T A A C T G A G C T A C T G A C T G C G T A A C T G A C T G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CCAGCAGTGGAGG---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A T G C A G T C C G T A A C T G A T G C C G T A A C T G A G C T A C T G A C T G C G T A A C T G A C T G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Gabpa/MA0062.2/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CCAGCAGTGGAGG
CCGGAAGTGGC--
 A T G C A G T C C G T A A C T G A T G C C G T A A C T G A G C T A C T G A C T G C G T A A C T G A C T G
T A G C T G A C A C T G A C T G T C G A G C T A T C A G G A C T T C A G T C A G T G A C A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CCAGCAGTGGAGG
NCAGCTGCTG---
 A T G C A G T C C G T A A C T G A T G C C G T A A C T G A G C T A C T G A C T G C G T A A C T G A C T G
T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCAGCAGTGGAGG
CCACACAGCAGGAGA--
 A C G T A C G T A C G T A C G T A T G C A G T C C G T A A C T G A T G C C G T A A C T G A G C T A C T G A C T G C G T A A C T G A C T G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CCAGCAGTGGAGG
CCAGCTGTTN---
 A T G C A G T C C G T A A C T G A T G C C G T A A C T G A G C T A C T G A C T G C G T A A C T G A C T G
T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A A C G T A C G T A C G T