Information for 5-GTGGCCAAGG (Motif 15)

A C T G A G C T A C T G A C T G T A G C A G T C C T G A G T C A C T A G C T A G
Reverse Opposite:
A G T C A G T C A C G T A G C T C T A G A T C G G T A C A G T C T C G A T G A C
p-value:1e-9
log p-value:-2.099e+01
Information Content per bp:1.832
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.31%
Number of Background Sequences with motif180.4
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets49.9 +/- 30.0bp
Average Position of motif in Background54.5 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GTGGCCAAGG----
GTTGCCATGGNAAC
 A C T G A G C T A C T G A C T G T A G C A G T C C T G A G T C A C T A G C T A G A C G T A C G T A C G T A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

PB0200.1_Zfp187_2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GTGGCCAAGG----
NNAGGGACAAGGGCNC
 A C G T A C G T A C T G A G C T A C T G A C T G T A G C A G T C C T G A G T C A C T A G C T A G A C G T A C G T A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTGGCCAAGG---
NGTTGCCATGGCAA
 A C G T A C T G A G C T A C T G A C T G T A G C A G T C C T G A G T C A C T A G C T A G A C G T A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GTGGCCAAGG--
NNCGTTGCTATGGNN
 A C G T A C G T A C G T A C T G A G C T A C T G A C T G T A G C A G T C C T G A G T C A C T A G C T A G A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.65
Offset:-7
Orientation:reverse strand
Alignment:-------GTGGCCAAGG------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T A C T G A C T G T A G C A G T C C T G A G T C A C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GTGGCCAAGG---
-AGGTCAAGGTCA
 A C T G A G C T A C T G A C T G T A G C A G T C C T G A G T C A C T A G C T A G A C G T A C G T A C G T
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GTGGCCAAGG
CTGTTGCTAGGS
 A C G T A C G T A C T G A G C T A C T G A C T G T A G C A G T C C T G A G T C A C T A G C T A G
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTGGCCAAGG---
GGTTGCCATGGCAA
 A C G T A C T G A G C T A C T G A C T G T A G C A G T C C T G A G T C A C T A G C T A G A C G T A C G T A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GTGGCCAAGG---
-AGGTCAAGGTCA
 A C T G A G C T A C T G A C T G T A G C A G T C C T G A G T C A C T A G C T A G A C G T A C G T A C G T
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GTGGCCAAGG---
---NTCAAGGTCA
 A C T G A G C T A C T G A C T G T A G C A G T C C T G A G T C A C T A G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A