Information for 2-RTTAGCATDT (Motif 2)

C T A G A C G T A G C T C G T A C T A G T G A C C G T A A G C T C T G A G C A T
Reverse Opposite:
C G T A G A C T T C G A C G A T A C T G G A T C G C A T C T G A C G T A G A T C
p-value:1e-27
log p-value:-6.321e+01
Information Content per bp:1.645
Number of Target Sequences with motif98.0
Percentage of Target Sequences with motif12.01%
Number of Background Sequences with motif1529.0
Percentage of Background Sequences with motif3.23%
Average Position of motif in Targets52.6 +/- 27.6bp
Average Position of motif in Background50.1 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.85
Offset:-3
Orientation:reverse strand
Alignment:---RTTAGCATDT
BTVATTWGCATA-
 A C G T A C G T A C G T C T A G A C G T A G C T C G T A C T A G T G A C C G T A A G C T C T G A G C A T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.83
Offset:0
Orientation:forward strand
Alignment:RTTAGCATDT
ATTTGCATAA
 C T A G A C G T A G C T C G T A C T A G T G A C C G T A A G C T C T G A G C A T
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

POU3F2/MA0787.1/Jaspar

Match Rank:3
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--RTTAGCATDT
TAATTTGCATAA
 A C G T A C G T C T A G A C G T A G C T C G T A C T A G T G A C C G T A A G C T C T G A G C A T
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A

POU3F1/MA0786.1/Jaspar

Match Rank:4
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--RTTAGCATDT
TAATTTGCATAA
 A C G T A C G T C T A G A C G T A G C T C G T A C T A G T G A C C G T A A G C T C T G A G C A T
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---RTTAGCATDT
CTCATTTGCATW-
 A C G T A C G T A C G T C T A G A C G T A G C T C G T A C T A G T G A C C G T A A G C T C T G A G C A T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:6
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-RTTAGCATDT-
AATTTGCATANT
 A C G T C T A G A C G T A G C T C G T A C T A G T G A C C G T A A G C T C T G A G C A T A C G T
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T

POU3F4/MA0789.1/Jaspar

Match Rank:7
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:RTTAGCATDT
ATTTGCATA-
 C T A G A C G T A G C T C G T A C T A G T G A C C G T A A G C T C T G A G C A T
G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:8
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:RTTAGCATDT
ATTTGCATA-
 C T A G A C G T A G C T C G T A C T A G T G A C C G T A A G C T C T G A G C A T
G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T

POU3F3/MA0788.1/Jaspar

Match Rank:9
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--RTTAGCATDT-
AAATTAGCATAAT
 A C G T A C G T C T A G A C G T A G C T C G T A C T A G T G A C C G T A A G C T C T G A G C A T A C G T
G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T

POU2F2/MA0507.1/Jaspar

Match Rank:10
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---RTTAGCATDT
TTCATTTGCATAT
 A C G T A C G T A C G T C T A G A C G T A G C T C G T A C T A G T G A C C G T A A G C T C T G A G C A T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T