Information for 13-CCCATTGTGC (Motif 13)

A G T C A T G C A G T C C G T A G A C T A C G T A C T G G C A T A C T G A G T C
Reverse Opposite:
T C A G T G A C C G T A A G T C C G T A C T G A C G A T A C T G A T C G C T A G
p-value:1e-10
log p-value:-2.527e+01
Information Content per bp:1.835
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.21%
Number of Background Sequences with motif121.2
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets48.6 +/- 22.6bp
Average Position of motif in Background51.0 +/- 35.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.85
Offset:-4
Orientation:forward strand
Alignment:----CCCATTGTGC---
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T A G T C A T G C A G T C C G T A G A C T A C G T A C T G G C A T A C T G A G T C A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CCCATTGTGC
NCCATTGTTC
 A G T C A T G C A G T C C G T A G A C T A C G T A C T G G C A T A C T G A G T C
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CCCATTGTGC-
-CCATTGTTYB
 A G T C A T G C A G T C C G T A G A C T A C G T A C T G G C A T A C T G A G T C A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

PB0168.1_Sox14_2/Jaspar

Match Rank:4
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--CCCATTGTGC---
NNNCCATTGTGTNAN
 A C G T A C G T A G T C A T G C A G T C C G T A G A C T A C G T A C T G G C A T A C T G A G T C A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CCCATTGTGC
-CCTTTGTT-
 A G T C A T G C A G T C C G T A G A C T A C G T A C T G G C A T A C T G A G T C
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CCCATTGTGC-
-CCWTTGTYYB
 A G T C A T G C A G T C C G T A G A C T A C G T A C T G G C A T A C T G A G T C A C G T
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.75
Offset:1
Orientation:forward strand
Alignment:CCCATTGTGC
-CCATTGTTC
 A G T C A T G C A G T C C G T A G A C T A C G T A C T G G C A T A C T G A G T C
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CCCATTGTGC
CTCATTGTC-
 A G T C A T G C A G T C C G T A G A C T A C G T A C T G G C A T A C T G A G T C
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CCCATTGTGC
NCCATTGTTY
 A G T C A T G C A G T C C G T A G A C T A C G T A C T G G C A T A C T G A G T C
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CCCATTGTGC
-CCWTTGTY-
 A G T C A T G C A G T C C G T A G A C T A C G T A C T G G C A T A C T G A G T C
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T