Information for 1-CCTGCTGGGA (Motif 1)

A G T C G T A C G A C T A C T G A T G C C A G T A C T G C T A G A C T G C G T A
Reverse Opposite:
G C A T A G T C G A T C A G T C G T C A A T C G A G T C C T G A A C T G A C T G
p-value:1e-48
log p-value:-1.108e+02
Information Content per bp:1.753
Number of Target Sequences with motif211.0
Percentage of Target Sequences with motif25.86%
Number of Background Sequences with motif4015.6
Percentage of Background Sequences with motif8.49%
Average Position of motif in Targets49.3 +/- 24.7bp
Average Position of motif in Background49.7 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CCTGCTGGGA
CCTGCTGAGH
 A G T C G T A C G A C T A C T G A T G C C A G T A C T G C T A G A C T G C G T A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.92
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGGGA--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T A G T C G T A C G A C T A C T G A T G C C A G T A C T G C T A G A C T G C G T A A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.91
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTGGGA
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C G A C T A C T G A T G C C A G T A C T G C T A G A C T G C G T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGGGA--
TNTCCTGCTGTGNNG
 A C G T A C G T A C G T A G T C G T A C G A C T A C T G A T G C C A G T A C T G C T A G A C T G C G T A A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGGGA
CCCCCTGCTGTG-
 A C G T A C G T A C G T A G T C G T A C G A C T A C T G A T G C C A G T A C T G C T A G A C T G C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGGGA--
NNTCCTGCTGTGNNN
 A C G T A C G T A C G T A G T C G T A C G A C T A C T G A T G C C A G T A C T G C T A G A C T G C G T A A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTGGGA
GACCCCCCGCTGCGC
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C G A C T A C T G A T G C C A G T A C T G C T A G A C T G C G T A
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTGGGA
GACCCCCCGCTGTG-
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C G A C T A C T G A T G C C A G T A C T G C T A G A C T G C G T A
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTGGGA
GACCCCCCGCTGTGC
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C G A C T A C T G A T G C C A G T A C T G C T A G A C T G C G T A
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:10
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CCTGCTGGGA
CCAGCTGTTN
 A G T C G T A C G A C T A C T G A T G C C A G T A C T G C T A G A C T G C G T A
T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A