Information for 15-GGGATTCGCC (Motif 35)

A T C G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C A G T C
Reverse Opposite:
A C T G C T A G A G T C A C T G C G T A C G T A A C G T A G T C A G T C A T G C
p-value:1e-6
log p-value:-1.518e+01
Information Content per bp:1.935
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets35.0 +/- 32.6bp
Average Position of motif in Background36.7 +/- 16.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GGGATTCGCC-
GGGGATTCCCCC
 A C G T A T C G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C A G T C A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFKB1/MA0105.4/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GGGATTCGCC-
AGGGGAATCCCCT
 A C G T A C G T A T C G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C A G T C A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

PH0015.1_Crx/Jaspar

Match Rank:3
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----GGGATTCGCC-
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T A C G T A C G T A T C G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C A G T C A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

NFKB2/MA0778.1/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GGGATTCGCC-
AGGGGATTCCCCT
 A C G T A C G T A T C G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C A G T C A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GGGATTCGCC---
AGGGGGATTAGCTGCC
 A C G T A C G T A C G T A T C G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C A G T C A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GGGATTCGCC
-GGATTAGC-
 A T C G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C A G T C
A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T

GSC/MA0648.1/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGGATTCGCC
NNGGATTAGN-
 A C G T A T C G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C A G T C
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T

PITX3/MA0714.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GGGATTCGCC
GGGATTANN-
 A T C G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C A G T C
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GGGATTCGCC
VRGGATTARN-
 A C G T A T C G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C A G T C
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GGGATTCGCC---
NNAAGGGATTAACGANT
 A C G T A C G T A C G T A C G T A T C G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C A G T C A C G T A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T