Information for 3-ACRRTGCASACAW (Motif 5)

G T C A A G T C C T G A C T G A A C G T A C T G A G T C C G T A A T C G C G T A A G T C C G T A G C A T
Reverse Opposite:
C G T A A C G T A C T G A C G T A T G C A C G T A C T G A G T C C G T A A G C T A G C T A C T G A C G T
p-value:1e-13
log p-value:-3.058e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.3 +/- 30.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:ACRRTGCASACAW----
-CGAAGCACACAAAATA
 G T C A A G T C C T G A C T G A A C G T A C T G A G T C C G T A A T C G C G T A A G T C C G T A G C A T A C G T A C G T A C G T A C G T
A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---ACRRTGCASACAW-
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T G T C A A G T C C T G A C T G A A C G T A C T G A G T C C G T A A T C G C G T A A G T C C G T A G C A T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

PB0104.1_Zscan4_1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ACRRTGCASACAW--
TACATGTGCACATAAAA
 A C G T A C G T G T C A A G T C C T G A C T G A A C G T A C T G A G T C C G T A A T C G C G T A A G T C C G T A G C A T A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:ACRRTGCASACAW--
-----CCAGACRSVB
 G T C A A G T C C T G A C T G A A C G T A C T G A G T C C G T A A T C G C G T A A G T C C G T A G C A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ACRRTGCASACAW---
-ATTTGCATACAATGG
 G T C A A G T C C T G A C T G A A C G T A C T G A G T C C G T A A T C G C G T A A G T C C G T A G C A T A C G T A C G T A C G T
A C G T G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0130.1_Gm397_2/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:ACRRTGCASACAW----
-AGCGGCACACACGCAA
 G T C A A G T C C T G A C T G A A C G T A C T G A G T C C G T A A T C G C G T A A G T C C G T A G C A T A C G T A C G T A C G T A C G T
A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0044.1_Mtf1_1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ACRRTGCASACAW---
NNTTTGCACACGGCCC
 G T C A A G T C C T G A C T G A A C G T A C T G A G T C C G T A A T C G C G T A A G T C C G T A G C A T A C G T A C G T A C G T
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:ACRRTGCASACAW
-----BCAGACWA
 G T C A A G T C C T G A C T G A A C G T A C T G A G T C C G T A A T C G C G T A A G T C C G T A G C A T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

FOXA1/MA0148.3/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ACRRTGCASACAW---
-CAAAGTAAACANNNN
 G T C A A G T C C T G A C T G A A C G T A C T G A G T C C G T A A T C G C G T A A G T C C G T A G C A T A C G T A C G T A C G T
A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:ACRRTGCASACAW
-----CCAGACAG
 G T C A A G T C C T G A C T G A A C G T A C T G A G T C C G T A A T C G C G T A A G T C C G T A G C A T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G