Information for 2-CAGCACCYTGGASAGC (Motif 3)

A T G C C G T A A C T G T A G C C T G A A G T C A T G C A G T C C G A T A C T G A T C G C T G A A T G C C G T A A C T G G T A C
Reverse Opposite:
A C T G A G T C A C G T A T C G A G C T A T G C A G T C G C T A T C A G A T C G A C T G A G C T A T C G A G T C C G A T A T C G
p-value:1e-14
log p-value:-3.314e+01
Information Content per bp:1.805
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif25.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets44.3 +/- 21.7bp
Average Position of motif in Background51.3 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--CAGCACCYTGGASAGC---
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A T G C C G T A A C T G T A G C C T G A A G T C A T G C A G T C C G A T A C T G A T C G C T G A A T G C C G T A A C T G G T A C A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-CAGCACCYTGGASAGC---
TCAGCACCATGGACAGCTCC
 A C G T A T G C C G T A A C T G T A G C C T G A A G T C A T G C A G T C C G A T A C T G A T C G C T G A A T G C C G T A A C T G G T A C A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.54
Offset:12
Orientation:forward strand
Alignment:CAGCACCYTGGASAGC-
------------CAGCC
 A T G C C G T A A C T G T A G C C T G A A G T C A T G C A G T C C G A T A C T G A T C G C T G A A T G C C G T A A C T G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.51
Offset:10
Orientation:reverse strand
Alignment:CAGCACCYTGGASAGC
----------CACAGN
 A T G C C G T A A C T G T A G C C T G A A G T C A T G C A G T C C G A T A C T G A T C G C T G A A T G C C G T A A C T G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.49
Offset:5
Orientation:forward strand
Alignment:CAGCACCYTGGASAGC
-----CCAGGAACAG-
 A T G C C G T A A C T G T A G C C T G A A G T C A T G C A G T C C G A T A C T G A T C G C T G A A T G C C G T A A C T G G T A C
A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:6
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:CAGCACCYTGGASAGC---
----TCCCAGMCRAGCCCC
 A T G C C G T A A C T G T A G C C T G A A G T C A T G C A G T C C G A T A C T G A T C G C T G A A T G C C G T A A C T G G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.48
Offset:8
Orientation:forward strand
Alignment:CAGCACCYTGGASAGC
--------TTGACAGC
 A T G C C G T A A C T G T A G C C T G A A G T C A T G C A G T C C G A T A C T G A T C G C T G A A T G C C G T A A C T G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

PH0158.1_Rhox11_2/Jaspar

Match Rank:8
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:CAGCACCYTGGASAGC-----
----TCNCTTTACAGCGNNNT
 A T G C C G T A A C T G T A G C C T G A A G T C A T G C A G T C C G A T A C T G A T C G C T G A A T G C C G T A A C T G G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

Znf423/MA0116.1/Jaspar

Match Rank:9
Score:0.48
Offset:1
Orientation:forward strand
Alignment:CAGCACCYTGGASAGC
-GGCACCCAGGGGTGC
 A T G C C G T A A C T G T A G C C T G A A G T C A T G C A G T C C G A T A C T G A T C G C T G A A T G C C G T A A C T G G T A C
A C G T T C A G A T C G G T A C G T C A A G T C A G T C G A T C C G T A C T A G A C T G A C T G A C T G A C G T A C T G G T A C

Rhox11/MA0629.1/Jaspar

Match Rank:10
Score:0.47
Offset:4
Orientation:reverse strand
Alignment:CAGCACCYTGGASAGC-----
----TCNNTTTACAGCGNNNT
 A T G C C G T A A C T G T A G C C T G A A G T C A T G C A G T C C G A T A C T G A T C G C T G A A T G C C G T A A C T G G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T