Information for 9-RKTCACAGGA (Motif 18)

C T A G C A T G A G C T A G T C C G T A A G T C G C T A A T C G A T C G C G T A
Reverse Opposite:
A C G T A T G C A T G C C G A T A C T G C G A T A C T G C T G A G T A C G A T C
p-value:1e-8
log p-value:-1.993e+01
Information Content per bp:1.775
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.53%
Number of Background Sequences with motif243.3
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets49.1 +/- 30.8bp
Average Position of motif in Background50.2 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:1
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:RKTCACAGGA-
-GTCACATGAY
 C T A G C A T G A G C T A G T C C G T A A G T C G C T A A T C G A T C G C G T A A C G T
A C G T T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C

USF2/MA0526.1/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:RKTCACAGGA-
GGTCACATGAC
 C T A G C A T G A G C T A G T C C G T A A G T C G C T A A T C G A T C G C G T A A C G T
C T A G T C A G A G C T A G T C C G T A A G T C T C G A A C G T A C T G T C G A A G T C

SREBF1/MA0595.1/Jaspar

Match Rank:3
Score:0.72
Offset:1
Orientation:forward strand
Alignment:RKTCACAGGA-
-ATCACCCCAC
 C T A G C A T G A G C T A G T C C G T A A G T C G C T A A T C G A T C G C G T A A C G T
A C G T T C G A A C G T A G T C C G T A A T G C T A G C A G T C T A G C C G T A A G T C

TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer

Match Rank:4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-RKTCACAGGA-
BRGTCACGTGAC
 A C G T C T A G C A T G A G C T A G T C C G T A A G T C G C T A A T C G A T C G C G T A A C G T
A C T G C T A G T C A G A G C T T A G C G T C A A G T C T C A G G C A T T A C G T C G A A G T C

TFEC/MA0871.1/Jaspar

Match Rank:5
Score:0.71
Offset:1
Orientation:forward strand
Alignment:RKTCACAGGA-
-ATCACGTGAC
 C T A G C A T G A G C T A G T C C G T A A G T C G C T A A T C G A T C G C G T A A C G T
A C G T T C G A C A G T G T A C C G T A A G T C T C A G G A C T A C T G T C G A A G T C

Srebf1(var.2)/MA0829.1/Jaspar

Match Rank:6
Score:0.70
Offset:1
Orientation:forward strand
Alignment:RKTCACAGGA-
-ATCACGTGAC
 C T A G C A T G A G C T A G T C C G T A A G T C G C T A A T C G A T C G C G T A A C G T
A C G T T C G A G C A T G T A C C T G A A T G C T A C G G A C T T A C G G C T A A G T C

SREBF2/MA0596.1/Jaspar

Match Rank:7
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:RKTCACAGGA-
-ATCACCCCAT
 C T A G C A T G A G C T A G T C C G T A A G T C G C T A A T C G A T C G C G T A A C G T
A C G T C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T

SREBF2(var.2)/MA0828.1/Jaspar

Match Rank:8
Score:0.70
Offset:1
Orientation:forward strand
Alignment:RKTCACAGGA-
-ATCACGTGAC
 C T A G C A T G A G C T A G T C C G T A A G T C G C T A A T C G A T C G C G T A A C G T
A C G T T C G A G C A T T A G C C T G A A T G C T A C G G A C T A T C G C G T A A G T C

Mitf/MA0620.1/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:forward strand
Alignment:RKTCACAGGA
GGTCACGTGG
 C T A G C A T G A G C T A G T C C G T A A G T C G C T A A T C G A T C G C G T A
C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.69
Offset:1
Orientation:forward strand
Alignment:RKTCACAGGA-
-ATCACCCCAT
 C T A G C A T G A G C T A G T C C G T A A G T C G C T A A T C G A T C G C G T A A C G T
A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T