Information for 5-AGCACCATGGACA (Motif 6)

C G T A A C T G G T A C C G T A A G T C G T A C T G C A A G C T C T A G A C T G C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A G T C A G T C T C G A A C G T A C T G A C T G A C G T A C T G A G T C A C G T
p-value:1e-13
log p-value:-3.016e+01
Information Content per bp:1.929
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif24.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets54.5 +/- 20.6bp
Average Position of motif in Background55.8 +/- 42.9bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---AGCACCATGGACA-----
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T C G T A A C T G G T A C C G T A A G T C G T A C T G C A A G C T C T A G A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--AGCACCATGGACA-----
TCAGCACCATGGACAGCTCC
 A C G T A C G T C G T A A C T G G T A C C G T A A G T C G T A C T G C A A G C T C T A G A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AGCACCATGGACA-
----CCAGGAACAG
 C G T A A C T G G T A C C G T A A G T C G T A C T G C A A G C T C T A G A C T G C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.53
Offset:5
Orientation:forward strand
Alignment:AGCACCATGGACA--
-----CAAGGHCANV
 C G T A A C T G G T A C C G T A A G T C G T A C T G C A A G C T C T A G A C T G C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AGCACCATGGACA
-GAACAATGGN--
 C G T A A C T G G T A C C G T A A G T C G T A C T G C A A G C T C T A G A C T G C G T A A G T C C G T A
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:AGCACCATGGACA
VRAACAATGG---
 C G T A A C T G G T A C C G T A A G T C G T A C T G C A A G C T C T A G A C T G C G T A A G T C C G T A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:7
Score:0.50
Offset:7
Orientation:forward strand
Alignment:AGCACCATGGACA-
-------TTGACAG
 C G T A A C T G G T A C C G T A A G T C G T A C T G C A A G C T C T A G A C T G C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.50
Offset:7
Orientation:forward strand
Alignment:AGCACCATGGACA--
-------TTGACAGG
 C G T A A C T G G T A C C G T A A G T C G T A C T G C A A G C T C T A G A C T G C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.50
Offset:4
Orientation:forward strand
Alignment:AGCACCATGGACA-
----CAAAGGTCAG
 C G T A A C T G G T A C C G T A A G T C G T A C T G C A A G C T C T A G A C T G C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:AGCACCATGGACA
AAAACAATGG---
 C G T A A C T G G T A C C G T A A G T C G T A C T G C A A G C T C T A G A C T G C G T A A G T C C G T A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T