Information for 12-GCCAAAATACCCT (Motif 18)

A C T G A G T C A G T C C G T A G T C A G T C A C G T A A C G T C G T A A G T C A G T C A G T C A G C T
Reverse Opposite:
C T G A A C T G A C T G C T A G G C A T G T C A A C G T A C G T A C G T A C G T A C T G A C T G A G T C
p-value:1e-7
log p-value:-1.816e+01
Information Content per bp:1.861
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif8.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets41.4 +/- 18.4bp
Average Position of motif in Background44.2 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCCAAAATACCCT
CGTGCCAAG-------
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A G T C A G T C A C G T A A C G T C G T A A G T C A G T C A G T C A G C T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAAATACCCT
TGCCAA--------
 A C G T A C T G A G T C A G T C C G T A G T C A G T C A C G T A A C G T C G T A A G T C A G T C A G T C A G C T
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GCCAAAATACCCT-
---AAGATATCCTT
 A C T G A G T C A G T C C G T A G T C A G T C A C G T A A C G T C G T A A G T C A G T C A G T C A G C T A C G T
A C G T A C G T A C G T G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCCAAAATACCCT
GGTGCCAAGT------
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A G T C A G T C A C G T A A C G T C G T A A G T C A G T C A G T C A G C T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T A C G T

GFY(?)/Promoter/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCCAAAATACCCT
ACTACAATTCCC-
 A C T G A G T C A G T C C G T A G T C A G T C A C G T A A C G T C G T A A G T C A G T C A G T C A G C T
T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAAATACCCT--
TGCCAAAATAAACANN
 A C G T A C T G A G T C A G T C C G T A G T C A G T C A C G T A A C G T C G T A A G T C A G T C A G T C A G C T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GCCAAAATACCCT---
------ATTTCCTGTN
 A C T G A G T C A G T C C G T A G T C A G T C A C G T A A C G T C G T A A G T C A G T C A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T A C G T A C G T A G T C A G T C A C G T A T C G G A C T A T C G

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAAATACCCT-
GGTCANNGTGACCTN
 A C G T A C T G A G T C A G T C C G T A G T C A G T C A C G T A A C G T C G T A A G T C A G T C A G T C A G C T A C G T
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GCCAAAATACCCT-----
--GATAACATCCTAGTAG
 A C T G A G T C A G T C C G T A G T C A G T C A C G T A A C G T C G T A A G T C A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCCAAAATACCCT
TTGCCAAG-------
 A C G T A C G T A C T G A G T C A G T C C G T A G T C A G T C A C G T A A C G T C G T A A G T C A G T C A G T C A G C T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T