Information for 6-TGCGTTCGTT (Motif 18)

A C G T A C T G A G T C A T C G C G A T A C G T A G T C A C T G A C G T A C G T
Reverse Opposite:
G T C A G T C A A G T C C T A G C G T A G C T A T A G C A C T G G T A C C G T A
p-value:1e-10
log p-value:-2.365e+01
Information Content per bp:1.856
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif22.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets49.9 +/- 27.3bp
Average Position of motif in Background49.3 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TGCGTTCGTT---
-ACTTTCGTTTCT
 A C G T A C T G A G T C A T C G C G A T A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGCGTTCGTT
TTGCGTGCVA-
 A C G T A C G T A C T G A G T C A T C G C G A T A C G T A G T C A C T G A C G T A C G T
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TGCGTTCGTT
--CCTTTGTT
 A C G T A C T G A G T C A T C G C G A T A C G T A G T C A C T G A C G T A C G T
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TGCGTTCGTT--
--CCTTTGTTTT
 A C G T A C T G A G T C A T C G C G A T A C G T A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

PB0036.1_Irf6_1/Jaspar

Match Rank:5
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TGCGTTCGTT---
NNNTTGGTTTCGNTNNN
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A T C G C G A T A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T
G C T A G T A C G C A T A C G T A G C T C T A G A C T G A C G T G C A T A C G T A G T C C T A G C T G A G A C T G A T C G C T A C A T G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TGCGTTCGTT-
-NCCATTGTTC
 A C G T A C T G A G T C A T C G C G A T A C G T A G T C A C T G A C G T A C G T A C G T
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

PB0035.1_Irf5_1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGCGTTCGTT----
NTGGTTTCGGTTNNN
 A C G T A C G T A C T G A G T C A T C G C G A T A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G A C T C T A G A C T G A C G T G C A T A G C T A G T C C T A G C T A G G A C T G C A T G A C T G C T A C G A T

PB0151.1_Myf6_2/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TGCGTTCGTT---
GGNGCGNCTGTTNNN
 A C G T A C G T A C G T A C T G A G T C A T C G C G A T A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

POL001.1_MTE/Jaspar

Match Rank:9
Score:0.54
Offset:-8
Orientation:reverse strand
Alignment:--------TGCGTTCGTT-
NCGACCGCTCCGCTCGAAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A T C G C G A T A C G T A G T C A C T G A C G T A C G T A C G T
T C A G A T G C C T A G C G T A A T G C A G T C A C T G G A C T A C G T A T G C A T G C A C T G A G T C A C G T A G T C A C T G C T G A C T G A T C G A

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TGCGTTCGTT-----
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A C T G A G T C A T C G C G A T A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T