Information for 8-GCTCAGGGGTCAGCCA (Motif 18)

A C T G A G T C A C G T A T G C C G T A A C T G A C T G A T C G T C A G A C G T A T G C C G T A A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C A C G T A T C G C G T A A G T C A T G C T A G C G T A C A C G T A T C G C G T A A C T G A G T C
p-value:1e-6
log p-value:-1.406e+01
Information Content per bp:1.919
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.0 +/- 20.8bp
Average Position of motif in Background31.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GCTCAGGGGTCAGCCA
----AGRGGTCA----
 A C T G A G T C A C G T A T G C C G T A A C T G A C T G A T C G T C A G A C G T A T G C C G T A A C T G A G T C A G T C C G T A
A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCTCAGGGGTCAGCCA-
GGCGAGGGGTCAAGGGC
 A C T G A G T C A C G T A T G C C G T A A C T G A C T G A T C G T C A G A C G T A T G C C G T A A C T G A G T C A G T C C G T A A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0030.1_Hnf4a_1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCTCAGGGGTCAGCCA-
CTCCAGGGGTCAATTGA
 A C T G A G T C A C G T A T G C C G T A A C T G A C T G A T C G T C A G A C G T A T G C C G T A A C T G A G T C A G T C C G T A A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GCTCAGGGGTCAGCCA-
----AGGTGNCAGACAG
 A C T G A G T C A C G T A T G C C G T A A C T G A C T G A T C G T C A G A C G T A T G C C G T A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

NR2C2/MA0504.1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCTCAGGGGTCAGCCA
AGGGGTCAGAGGTCA----
 A C G T A C G T A C G T A C T G A G T C A C G T A T G C C G T A A C T G A C T G A T C G T C A G A C G T A T G C C G T A A C T G A G T C A G T C C G T A
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCTCAGGGGTCAGCCA
GAGGTCAAAGGTCA----
 A C G T A C G T A C T G A G T C A C G T A T G C C G T A A C T G A C T G A T C G T C A G A C G T A T G C C G T A A C T G A G T C A G T C C G T A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T A C G T A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCTCAGGGGTCAGCCA
GAGGTCAAAGGTCA----
 A C G T A C G T A C T G A G T C A C G T A T G C C G T A A C T G A C T G A T C G T C A G A C G T A T G C C G T A A C T G A G T C A G T C C G T A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCTCAGGGGTCAGCCA-
NTNNNGGGGTCANGNNN
 A C T G A G T C A C G T A T G C C G T A A C T G A C T G A T C G T C A G A C G T A T G C C G T A A C T G A G T C A G T C C G T A A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GCTCAGGGGTCAGCCA
----AGGTGHCAGACA
 A C T G A G T C A C G T A T G C C G T A A C T G A C T G A T C G T C A G A C G T A T G C C G T A A C T G A G T C A G T C C G T A
A C G T A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

RXRG/MA0856.1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCTCAGGGGTCAGCCA
GGGGTCAAAGGTCA----
 A C G T A C G T A C T G A G T C A C G T A T G C C G T A A C T G A C T G A T C G T C A G A C G T A T G C C G T A A C T G A G T C A G T C C G T A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T A C G T A C G T A C G T