Information for 6-AGGTGGCAGACGTGGA (Motif 11)

C G T A A C T G C T A G A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C A T C G A C G T A C T G A T C G T C G A
Reverse Opposite:
A C G T A T G C A G T C C G T A A T G C A C T G A C G T A G T C A C G T A C T G A G T C A G T C C G T A A G T C A G T C C G A T
p-value:1e-8
log p-value:-1.954e+01
Information Content per bp:1.887
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.8 +/- 15.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AGGTGGCAGACGTGGA
AGGTGHCAGACA----
 C G T A A C T G C T A G A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C A T C G A C G T A C T G A T C G T C G A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AGGTGGCAGACGTGGA
AGGTGNCAGACAG---
 C G T A A C T G C T A G A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C A T C G A C G T A C T G A T C G T C G A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:AGGTGGCAGACGTGGA
-----CCAGACRSVB-
 C G T A A C T G C T A G A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C A T C G A C G T A C T G A T C G T C G A
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AGGTGGCAGACGTGGA
GGTTGGCAT-------
 C G T A A C T G C T A G A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C A T C G A C G T A C T G A T C G T C G A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGGTGGCAGACGTGGA
AGGTGTCA--------
 C G T A A C T G C T A G A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C A T C G A C G T A C T G A T C G T C G A
C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGGTGGCAGACGTGGA
--ATGCCAGACN----
 C G T A A C T G C T A G A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C A T C G A C G T A C T G A T C G T C G A
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T

XBP1/MA0844.1/Jaspar

Match Rank:7
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:AGGTGGCAGACGTGGA---
-----GATGACGTGGCANT
 C G T A A C T G C T A G A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C A T C G A C G T A C T G A T C G T C G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T G C A G A C T A C T G T C G A G A T C C T A G G A C T T C A G C A T G G T A C T G C A G A C T G C A T

HINFP/MA0131.2/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGGTGGCAGACGTGGA
---NCGCGGACGTTG-
 C G T A A C T G C T A G A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C A T C G A C G T A C T G A T C G T C G A
A C G T A C G T A C G T T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:9
Score:0.56
Offset:7
Orientation:forward strand
Alignment:AGGTGGCAGACGTGGA
-------GGACGTGC-
 C G T A A C T G C T A G A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C A T C G A C G T A C T G A T C G T C G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:AGGTGGCAGACGTGGA
-----CCAGACAG---
 C G T A A C T G C T A G A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C A T C G A C G T A C T G A T C G T C G A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T