Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 751)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47789)	% of Background Sequences with Motif
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-44	-1.036e+02	0.0000	244.0	32.49%	6011.8	12.58%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-43	-9.996e+01	0.0000	191.0	25.43%	3999.5	8.37%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-42	-9.746e+01	0.0000	151.0	20.11%	2641.1	5.53%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-35	-8.128e+01	0.0000	111.0	14.78%	1711.7	3.58%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-34	-8.054e+01	0.0000	130.0	17.31%	2333.3	4.88%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-34	-7.881e+01	0.0000	165.0	21.97%	3640.1	7.62%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-34	-7.868e+01	0.0000	103.0	13.72%	1522.6	3.19%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-32	-7.544e+01	0.0000	283.0	37.68%	9007.8	18.85%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-25	-5.950e+01	0.0000	123.0	16.38%	2652.6	5.55%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-21	-4.891e+01	0.0000	76.0	10.12%	1306.6	2.73%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-19	-4.485e+01	0.0000	74.0	9.85%	1337.8	2.80%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-17	-3.952e+01	0.0000	117.0	15.58%	3137.6	6.57%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-16	-3.831e+01	0.0000	190.0	25.30%	6547.7	13.71%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-16	-3.742e+01	0.0000	26.0	3.46%	179.3	0.38%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-15	-3.645e+01	0.0000	128.0	17.04%	3752.4	7.85%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-14	-3.339e+01	0.0000	74.0	9.85%	1663.4	3.48%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-13	-3.183e+01	0.0000	79.0	10.52%	1908.9	4.00%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-13	-3.146e+01	0.0000	29.0	3.86%	297.1	0.62%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-13	-3.095e+01	0.0000	116.0	15.45%	3500.3	7.33%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-11	-2.731e+01	0.0000	77.0	10.25%	2006.9	4.20%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-10	-2.518e+01	0.0000	107.0	14.25%	3413.8	7.15%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-10	-2.500e+01	0.0000	34.0	4.53%	530.4	1.11%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-10	-2.306e+01	0.0000	58.0	7.72%	1420.7	2.97%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-8	-2.071e+01	0.0000	71.0	9.45%	2056.7	4.30%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-8	-1.932e+01	0.0000	59.0	7.86%	1616.0	3.38%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-8	-1.927e+01	0.0000	25.0	3.33%	380.3	0.80%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-6	-1.550e+01	0.0000	62.0	8.26%	1942.0	4.06%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-6	-1.530e+01	0.0000	254.0	33.82%	12178.3	25.49%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-6	-1.420e+01	0.0000	190.0	25.30%	8670.1	18.15%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-6	-1.385e+01	0.0000	169.0	22.50%	7547.1	15.80%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-5	-1.374e+01	0.0000	56.0	7.46%	1775.4	3.72%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-5	-1.313e+01	0.0000	71.0	9.45%	2512.5	5.26%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-5	-1.232e+01	0.0000	27.0	3.60%	630.5	1.32%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-5	-1.178e+01	0.0001	102.0	13.58%	4182.6	8.75%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-5	-1.174e+01	0.0001	52.0	6.92%	1716.2	3.59%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-4	-1.052e+01	0.0003	14.0	1.86%	232.3	0.49%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-4	-1.046e+01	0.0003	170.0	22.64%	8056.8	16.86%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-4	-1.013e+01	0.0004	75.0	9.99%	2957.0	6.19%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-4	-1.011e+01	0.0004	225.0	29.96%	11288.2	23.63%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-4	-9.700e+00	0.0006	4.0	0.53%	13.3	0.03%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-3	-8.607e+00	0.0016	47.0	6.26%	1700.1	3.56%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-3	-8.335e+00	0.0021	55.0	7.32%	2114.6	4.43%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-3	-8.333e+00	0.0021	73.0	9.72%	3031.7	6.35%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-3	-8.140e+00	0.0024	30.0	3.99%	942.5	1.97%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-3	-7.956e+00	0.0028	7.0	0.93%	81.8	0.17%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-3	-7.775e+00	0.0033	92.0	12.25%	4105.1	8.59%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-3	-7.473e+00	0.0044	251.0	33.42%	13348.3	27.94%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-3	-7.414e+00	0.0046	52.0	6.92%	2047.4	4.29%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-3	-7.327e+00	0.0049	37.0	4.93%	1318.8	2.76%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-3	-7.056e+00	0.0063	114.0	15.18%	5419.7	11.34%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-3	-6.931e+00	0.0070	74.0	9.85%	3243.7	6.79%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-3	-6.911e+00	0.0070	10.0	1.33%	190.0	0.40%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-6.903e+00	0.0070	19.0	2.53%	532.2	1.11%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-2	-6.538e+00	0.0098	100.0	13.32%	4717.8	9.88%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-2	-5.941e+00	0.0174	17.0	2.26%	494.0	1.03%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-2	-5.698e+00	0.0218	71.0	9.45%	3241.3	6.78%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-5.667e+00	0.0221	16.0	2.13%	465.5	0.97%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-2	-5.292e+00	0.0316	23.0	3.06%	802.5	1.68%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-2	-5.054e+00	0.0394	19.0	2.53%	632.2	1.32%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-2	-5.045e+00	0.0394	139.0	18.51%	7221.9	15.12%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-2	-4.905e+00	0.0442	4.0	0.53%	48.9	0.10%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-2	-4.838e+00	0.0465	39.0	5.19%	1639.0	3.43%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-2	-4.765e+00	0.0492	78.0	10.39%	3769.8	7.89%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-4.707e+00	0.0514	8.0	1.07%	182.9	0.38%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-2	-4.638e+00	0.0542	6.0	0.80%	113.4	0.24%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-2	-4.635e+00	0.0542	36.0	4.79%	1505.2	3.15%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-2	-4.629e+00	0.0542	31.0	4.13%	1249.6	2.62%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-4.429e+00	0.0638	14.0	1.86%	443.9	0.93%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-4.412e+00	0.0640	14.0	1.86%	444.7	0.93%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-4.393e+00	0.0643	50.0	6.66%	2278.0	4.77%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-4.342e+00	0.0667	14.0	1.86%	448.7	0.94%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-4.324e+00	0.0670	14.0	1.86%	449.8	0.94%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-4.099e+00	0.0827	39.0	5.19%	1724.6	3.61%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-4.089e+00	0.0827	17.0	2.26%	603.9	1.26%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-4.070e+00	0.0829	36.0	4.79%	1568.2	3.28%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-4.041e+00	0.0842	24.0	3.20%	950.8	1.99%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-3.999e+00	0.0867	40.0	5.33%	1790.1	3.75%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-1	-3.986e+00	0.0867	45.0	5.99%	2062.9	4.32%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-3.982e+00	0.0867	64.0	8.52%	3114.3	6.52%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-3.913e+00	0.0909	42.0	5.59%	1909.9	4.00%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-3.804e+00	0.1001	11.0	1.46%	344.1	0.72%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.785e+00	0.1009	10.0	1.33%	301.1	0.63%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-1	-3.739e+00	0.1042	2.0	0.27%	15.1	0.03%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-3.725e+00	0.1045	25.0	3.33%	1031.4	2.16%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-3.599e+00	0.1172	5.0	0.67%	106.1	0.22%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-3.591e+00	0.1172	33.0	4.39%	1466.0	3.07%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-1	-3.544e+00	0.1209	22.0	2.93%	895.1	1.87%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-3.480e+00	0.1274	39.0	5.19%	1805.7	3.78%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-3.472e+00	0.1274	47.0	6.26%	2248.0	4.71%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-1	-3.443e+00	0.1293	12.0	1.60%	411.7	0.86%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-3.405e+00	0.1328	2.0	0.27%	18.7	0.04%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-1	-3.312e+00	0.1442	19.0	2.53%	764.4	1.60%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-1	-3.260e+00	0.1503	20.0	2.66%	820.8	1.72%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-3.255e+00	0.1503	10.0	1.33%	330.1	0.69%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-3.245e+00	0.1503	3.0	0.40%	47.9	0.10%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-3.235e+00	0.1503	38.0	5.06%	1785.1	3.74%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-3.210e+00	0.1514	4.0	0.53%	81.7	0.17%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-3.207e+00	0.1514	57.0	7.59%	2855.7	5.98%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-3.130e+00	0.1608	7.0	0.93%	203.7	0.43%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-3.111e+00	0.1622	35.0	4.66%	1638.7	3.43%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-3.085e+00	0.1648	41.0	5.46%	1974.8	4.13%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-3.028e+00	0.1727	8.0	1.07%	252.5	0.53%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-1	-3.011e+00	0.1739	37.0	4.93%	1764.0	3.69%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-3.008e+00	0.1739	46.0	6.13%	2267.6	4.75%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-1	-2.990e+00	0.1744	22.0	2.93%	952.7	1.99%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-2.985e+00	0.1744	9.0	1.20%	300.7	0.63%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.973e+00	0.1744	26.0	3.46%	1167.1	2.44%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-2.937e+00	0.1788	29.0	3.86%	1334.8	2.79%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-2.902e+00	0.1833	92.0	12.25%	4958.1	10.38%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-2.890e+00	0.1839	49.0	6.52%	2458.7	5.15%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-2.801e+00	0.1993	4.0	0.53%	93.5	0.20%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-2.770e+00	0.2037	28.0	3.73%	1302.5	2.73%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-2.738e+00	0.2084	3.0	0.40%	58.1	0.12%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-2.686e+00	0.2176	71.0	9.45%	3774.4	7.90%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.670e+00	0.2192	18.0	2.40%	776.2	1.62%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.656e+00	0.2203	26.0	3.46%	1208.4	2.53%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-2.644e+00	0.2212	10.0	1.33%	370.8	0.78%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-2.532e+00	0.2452	14.0	1.86%	581.1	1.22%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-2.520e+00	0.2460	84.0	11.19%	4584.8	9.60%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-2.483e+00	0.2533	46.0	6.13%	2364.4	4.95%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-1	-2.475e+00	0.2533	24.0	3.20%	1123.4	2.35%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-2.463e+00	0.2542	46.0	6.13%	2368.1	4.96%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-2.446e+00	0.2563	12.0	1.60%	486.4	1.02%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-2.398e+00	0.2669	25.0	3.33%	1190.0	2.49%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-1	-2.389e+00	0.2672	24.0	3.20%	1136.0	2.38%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-2.366e+00	0.2712	22.0	2.93%	1028.2	2.15%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-2.359e+00	0.2712	28.0	3.73%	1362.9	2.85%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-1	-2.354e+00	0.2712	94.0	12.52%	5229.8	10.95%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-2.351e+00	0.2712	31.0	4.13%	1532.9	3.21%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-2.344e+00	0.2712	31.0	4.13%	1533.8	3.21%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-2.330e+00	0.2712	21.0	2.80%	979.0	2.05%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.275e+00	0.2836	67.0	8.92%	3640.7	7.62%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.252e+00	0.2880	72.0	9.59%	3943.1	8.25%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.201e+00	0.3008	66.0	8.79%	3600.7	7.54%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-2.163e+00	0.3099	6.0	0.80%	210.0	0.44%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-2.152e+00	0.3113	22.0	2.93%	1058.5	2.22%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.144e+00	0.3113	11.0	1.46%	462.1	0.97%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.108e+00	0.3203	16.0	2.13%	733.8	1.54%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-2.097e+00	0.3218	31.0	4.13%	1576.8	3.30%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-2.046e+00	0.3360	56.0	7.46%	3047.1	6.38%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.019e+00	0.3428	13.0	1.73%	581.8	1.22%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.001e+00	0.3466	11.0	1.46%	476.8	1.00%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.992e+00	0.3471	4.0	0.53%	126.0	0.26%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.980e+00	0.3490	125.0	16.64%	7238.4	15.15%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.962e+00	0.3530	11.0	1.46%	480.9	1.01%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.953e+00	0.3537	45.0	5.99%	2420.6	5.07%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.855e+00	0.3873	4.0	0.53%	132.6	0.28%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.826e+00	0.3963	15.0	2.00%	714.4	1.50%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.824e+00	0.3963	66.0	8.79%	3706.4	7.76%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.821e+00	0.3963	19.0	2.53%	939.7	1.97%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.762e+00	0.4140	26.0	3.46%	1350.6	2.83%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.761e+00	0.4140	1.0	0.13%	12.9	0.03%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.730e+00	0.4216	41.0	5.46%	2237.6	4.68%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.727e+00	0.4216	9.0	1.20%	397.7	0.83%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.714e+00	0.4232	20.0	2.66%	1013.4	2.12%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.708e+00	0.4232	20.0	2.66%	1014.4	2.12%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.671e+00	0.4358	14.0	1.86%	679.3	1.42%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.645e+00	0.4447	42.0	5.59%	2319.0	4.85%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.605e+00	0.4600	5.0	0.67%	197.4	0.41%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.598e+00	0.4603	49.0	6.52%	2750.3	5.76%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.581e+00	0.4654	4.0	0.53%	148.1	0.31%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.490e+00	0.5066	4.0	0.53%	154.0	0.32%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.477e+00	0.5097	6.0	0.80%	260.2	0.54%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.475e+00	0.5097	5.0	0.67%	207.9	0.44%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.465e+00	0.5097	35.0	4.66%	1947.0	4.08%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.446e+00	0.5165	24.0	3.20%	1296.7	2.71%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.433e+00	0.5199	18.0	2.40%	946.3	1.98%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.433e+00	0.5199	40.0	5.33%	2255.8	4.72%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.431e+00	0.5199	10.0	1.33%	486.7	1.02%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.409e+00	0.5232	51.0	6.79%	2928.3	6.13%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.337e+00	0.5593	72.0	9.59%	4239.8	8.87%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.336e+00	0.5593	3.0	0.40%	113.8	0.24%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.329e+00	0.5593	11.0	1.46%	557.3	1.17%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.321e+00	0.5593	12.0	1.60%	616.9	1.29%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.316e+00	0.5593	18.0	2.40%	968.3	2.03%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.295e+00	0.5663	9.0	1.20%	447.8	0.94%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.292e+00	0.5663	36.0	4.79%	2053.8	4.30%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.273e+00	0.5725	38.0	5.06%	2180.3	4.56%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.258e+00	0.5777	3.0	0.40%	118.8	0.25%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.255e+00	0.5777	76.0	10.12%	4519.6	9.46%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.254e+00	0.5777	37.0	4.93%	2126.0	4.45%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.231e+00	0.5842	15.0	2.00%	807.2	1.69%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.220e+00	0.5873	24.0	3.20%	1347.4	2.82%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.207e+00	0.5915	30.0	3.99%	1713.0	3.59%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.197e+00	0.5946	19.0	2.53%	1052.2	2.20%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.170e+00	0.6076	62.0	8.26%	3689.4	7.72%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.161e+00	0.6096	55.0	7.32%	3261.0	6.83%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.158e+00	0.6096	21.0	2.80%	1181.9	2.47%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.147e+00	0.6117	5.0	0.67%	237.5	0.50%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.140e+00	0.6129	30.0	3.99%	1732.3	3.63%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.138e+00	0.6129	64.0	8.52%	3826.6	8.01%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.131e+00	0.6129	44.0	5.86%	2593.5	5.43%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.073e+00	0.6452	5.0	0.67%	245.2	0.51%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.061e+00	0.6492	13.0	1.73%	720.5	1.51%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.060e+00	0.6492	49.0	6.52%	2928.3	6.13%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.050e+00	0.6496	4.0	0.53%	190.6	0.40%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.044e+00	0.6504	40.0	5.33%	2377.8	4.98%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-9.985e-01	0.6773	12.0	1.60%	672.3	1.41%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-9.760e-01	0.6892	41.0	5.46%	2464.3	5.16%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-9.702e-01	0.6898	5.0	0.67%	257.8	0.54%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-9.210e-01	0.7210	29.0	3.86%	1738.0	3.64%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-8.896e-01	0.7403	18.0	2.40%	1065.4	2.23%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-8.520e-01	0.7648	54.0	7.19%	3330.8	6.97%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-8.504e-01	0.7648	22.0	2.93%	1325.8	2.78%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-8.236e-01	0.7792	90.0	11.98%	5615.6	11.75%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-7.853e-01	0.8057	13.0	1.73%	782.0	1.64%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-7.847e-01	0.8057	3.0	0.40%	160.0	0.33%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-7.809e-01	0.8057	4.0	0.53%	221.7	0.46%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-7.479e-01	0.8244	5.0	0.67%	288.1	0.60%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-7.464e-01	0.8244	28.0	3.73%	1738.6	3.64%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-7.384e-01	0.8244	9.0	1.20%	541.5	1.13%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-7.204e-01	0.8354	51.0	6.79%	3207.6	6.71%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-7.177e-01	0.8354	105.0	13.98%	6637.7	13.89%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-7.103e-01	0.8360	1.0	0.13%	43.1	0.09%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-6.929e-01	0.8468	70.0	9.32%	4430.2	9.27%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-6.907e-01	0.8468	6.0	0.80%	361.5	0.76%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-6.705e-01	0.8579	3.0	0.40%	173.2	0.36%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-6.660e-01	0.8579	21.0	2.80%	1324.1	2.77%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.637e-01	0.8579	1.0	0.13%	46.5	0.10%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-6.502e-01	0.8636	17.0	2.26%	1074.7	2.25%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-6.465e-01	0.8636	13.0	1.73%	819.4	1.72%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.350e-01	0.8689	1.0	0.13%	48.4	0.10%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-6.270e-01	0.8720	3.0	0.40%	179.2	0.38%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-5.864e-01	0.9041	4.0	0.53%	251.8	0.53%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.799e-01	0.9059	3.0	0.40%	186.1	0.39%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-5.758e-01	0.9059	10.0	1.33%	646.6	1.35%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-5.746e-01	0.9059	23.0	3.06%	1489.5	3.12%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-5.726e-01	0.9059	88.0	11.72%	5665.6	11.86%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-5.698e-01	0.9059	4.0	0.53%	254.7	0.53%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-5.605e-01	0.9059	5.0	0.67%	322.5	0.68%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-5.567e-01	0.9059	26.0	3.46%	1692.0	3.54%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-5.566e-01	0.9059	11.0	1.46%	717.7	1.50%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.475e-01	0.9059	8.0	1.07%	523.2	1.10%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-5.376e-01	0.9086	27.0	3.60%	1766.0	3.70%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-5.376e-01	0.9086	11.0	1.46%	723.6	1.51%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-5.329e-01	0.9086	75.0	9.99%	4863.2	10.18%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.074e-01	0.9247	3.0	0.40%	198.5	0.42%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-4.985e-01	0.9290	14.0	1.86%	934.9	1.96%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-4.940e-01	0.9293	2.0	0.27%	131.1	0.27%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.900e-01	0.9293	9.0	1.20%	606.7	1.27%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-4.871e-01	0.9293	24.0	3.20%	1595.4	3.34%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-4.847e-01	0.9293	58.0	7.72%	3805.2	7.96%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-4.838e-01	0.9293	9.0	1.20%	608.8	1.27%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.741e-01	0.9293	2.0	0.27%	134.7	0.28%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.741e-01	0.9293	2.0	0.27%	134.7	0.28%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-4.489e-01	0.9445	2.0	0.27%	138.3	0.29%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.444e-01	0.9449	5.0	0.67%	350.0	0.73%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-4.291e-01	0.9557	6.0	0.80%	422.2	0.88%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-4.285e-01	0.9557	156.0	20.77%	10175.4	21.30%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-4.149e-01	0.9616	4.0	0.53%	287.7	0.60%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-4.075e-01	0.9648	5.0	0.67%	359.0	0.75%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-3.951e-01	0.9730	41.0	5.46%	2767.5	5.79%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-3.935e-01	0.9730	5.0	0.67%	364.0	0.76%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.930e-01	0.9730	6.0	0.80%	433.1	0.91%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-3.920e-01	0.9730	2.0	0.27%	148.1	0.31%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.899e-01	0.9730	6.0	0.80%	434.1	0.91%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-3.786e-01	0.9730	20.0	2.66%	1389.8	2.91%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-3.766e-01	0.9730	4.0	0.53%	297.2	0.62%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-3.765e-01	0.9730	2.0	0.27%	151.1	0.32%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-3.724e-01	0.9730	61.0	8.12%	4096.1	8.57%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-3.597e-01	0.9733	3.0	0.40%	229.6	0.48%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-3.460e-01	0.9830	10.0	1.33%	728.7	1.53%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-3.444e-01	0.9830	40.0	5.33%	2742.9	5.74%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.361e-01	0.9852	5.0	0.67%	381.4	0.80%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-3.341e-01	0.9852	1.0	0.13%	80.3	0.17%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-3.259e-01	0.9878	14.0	1.86%	1013.6	2.12%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-3.203e-01	0.9897	19.0	2.53%	1357.8	2.84%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-3.189e-01	0.9897	18.0	2.40%	1290.3	2.70%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-3.180e-01	0.9897	23.0	3.06%	1629.4	3.41%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.175e-01	0.9897	12.0	1.60%	880.8	1.84%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-2.830e-01	1.0000	1.0	0.13%	89.8	0.19%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.752e-01	1.0000	30.0	3.99%	2135.7	4.47%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.642e-01	1.0000	11.0	1.46%	840.8	1.76%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-2.527e-01	1.0000	10.0	1.33%	776.5	1.63%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.518e-01	1.0000	3.0	0.40%	261.9	0.55%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.489e-01	1.0000	2.0	0.27%	182.7	0.38%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.451e-01	1.0000	25.0	3.33%	1823.8	3.82%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.450e-01	1.0000	1.0	0.13%	97.3	0.20%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.416e-01	1.0000	11.0	1.46%	854.0	1.79%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.375e-01	1.0000	58.0	7.72%	4050.3	8.48%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.346e-01	1.0000	15.0	2.00%	1141.1	2.39%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.342e-01	1.0000	8.0	1.07%	643.3	1.35%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.268e-01	1.0000	2.0	0.27%	189.2	0.40%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.254e-01	1.0000	12.0	1.60%	936.6	1.96%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-2.171e-01	1.0000	4.0	0.53%	353.7	0.74%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.162e-01	1.0000	70.0	9.32%	4878.3	10.21%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.065e-01	1.0000	4.0	0.53%	358.9	0.75%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.949e-01	1.0000	1.0	0.13%	110.7	0.23%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.948e-01	1.0000	6.0	0.80%	518.2	1.08%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.915e-01	1.0000	1.0	0.13%	111.9	0.23%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.883e-01	1.0000	9.0	1.20%	746.1	1.56%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.829e-01	1.0000	41.0	5.46%	2984.0	6.25%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.779e-01	1.0000	50.0	6.66%	3601.7	7.54%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.697e-01	1.0000	1.0	0.13%	118.7	0.25%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.695e-01	1.0000	2.0	0.27%	211.9	0.44%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.689e-01	1.0000	4.0	0.53%	378.3	0.79%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.614e-01	1.0000	18.0	2.40%	1420.9	2.97%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.612e-01	1.0000	1.0	0.13%	121.8	0.26%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.553e-01	1.0000	25.0	3.33%	1921.5	4.02%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.516e-01	1.0000	16.0	2.13%	1288.6	2.70%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.466e-01	1.0000	2.0	0.27%	223.0	0.47%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.449e-01	1.0000	13.0	1.73%	1078.5	2.26%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.435e-01	1.0000	4.0	0.53%	394.1	0.83%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.359e-01	1.0000	15.0	2.00%	1234.6	2.58%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.308e-01	1.0000	20.0	2.66%	1601.6	3.35%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.302e-01	1.0000	28.0	3.73%	2168.5	4.54%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.230e-01	1.0000	14.0	1.86%	1177.3	2.46%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.182e-01	1.0000	8.0	1.07%	732.9	1.53%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.155e-01	1.0000	6.0	0.80%	578.7	1.21%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.125e-01	1.0000	6.0	0.80%	581.2	1.22%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.115e-01	1.0000	6.0	0.80%	582.1	1.22%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.101e-01	1.0000	3.0	0.40%	334.9	0.70%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.045e-01	1.0000	5.0	0.67%	508.6	1.06%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.023e-01	1.0000	1.0	0.13%	148.4	0.31%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-9.570e-02	1.0000	6.0	0.80%	599.5	1.25%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-8.965e-02	1.0000	1.0	0.13%	156.4	0.33%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-8.278e-02	1.0000	15.0	2.00%	1313.8	2.75%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-7.691e-02	1.0000	14.0	1.86%	1249.8	2.62%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-7.510e-02	1.0000	5.0	0.67%	542.8	1.14%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-7.261e-02	1.0000	2.0	0.27%	275.4	0.58%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-7.124e-02	1.0000	1.0	0.13%	170.9	0.36%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-7.088e-02	1.0000	28.0	3.73%	2291.7	4.80%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.321e-02	1.0000	10.0	1.33%	969.0	2.03%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-5.343e-02	1.0000	27.0	3.60%	2272.2	4.76%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.823e-02	1.0000	1.0	0.13%	194.0	0.41%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-4.573e-02	1.0000	3.0	0.40%	409.9	0.86%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.252e-02	1.0000	2.0	0.27%	315.2	0.66%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-3.224e-02	1.0000	18.0	2.40%	1684.5	3.53%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.966e-02	1.0000	3.0	0.40%	445.0	0.93%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.691e-02	1.0000	3.0	0.40%	453.1	0.95%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.226e-02	1.0000	4.0	0.53%	567.4	1.19%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-2.148e-02	1.0000	24.0	3.20%	2205.7	4.62%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.132e-02	1.0000	2.0	0.27%	366.4	0.77%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.033e-02	1.0000	4.0	0.53%	575.0	1.20%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.468e-02	1.0000	59.0	7.86%	4835.5	10.12%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.361e-02	1.0000	4.0	0.53%	610.5	1.28%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.061e-02	1.0000	32.0	4.26%	2925.2	6.12%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-7.273e-03	1.0000	2.0	0.27%	444.5	0.93%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-5.999e-03	1.0000	6.0	0.80%	878.3	1.84%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-5.780e-03	1.0000	3.0	0.40%	576.7	1.21%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.663e-03	1.0000	9.0	1.20%	1181.5	2.47%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.597e-03	1.0000	10.0	1.33%	1298.2	2.72%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.126e-03	1.0000	4.0	0.53%	765.6	1.60%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.559e-03	1.0000	53.0	7.06%	4823.0	10.10%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-6.510e-04	1.0000	5.0	0.67%	970.9	2.03%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-6.250e-04	1.0000	3.0	0.40%	745.2	1.56%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-5.440e-04	1.0000	120.0	15.98%	9841.8	20.60%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	81.8	0.17%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	44.9	0.09%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	18.5	0.04%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	0.000e+00	1.0000	0.0	0.00%	194.4	0.41%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	16.9	0.04%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	87.2	0.18%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	0.000e+00	1.0000	0.0	0.00%	108.0	0.23%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	83.6	0.17%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	16.8	0.04%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	6.0	0.01%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	21.9	0.05%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	51.6	0.11%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	188.0	0.39%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	0.000e+00	1.0000	0.0	0.00%	96.1	0.20%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	53.0	0.11%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	3.6	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	18.9	0.04%