Information for 6-TGACCTGRSTAGT (Motif 9)

A C G T A C T G C G T A A T G C A G T C A C G T C T A G C T A G A T C G A C G T C T G A A C T G A C G T
Reverse Opposite:
C G T A A G T C A G C T G T C A A T C G A G C T A G T C C G T A A C T G A T C G C G A T A G T C C G T A
p-value:1e-6
log p-value:-1.463e+01
Information Content per bp:1.829
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.14%
Number of Background Sequences with motif15.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets56.0 +/- 25.8bp
Average Position of motif in Background60.3 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGACCTGRSTAGT
TGACCTYA-----
 A C G T A C T G C G T A A T G C A G T C A C G T C T A G C T A G A T C G A C G T C T G A A C T G A C G T
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGACCTGRSTAGT
TGACCT-------
 A C G T A C T G C G T A A T G C A G T C A C G T C T A G C T A G A T C G A C G T C T G A A C T G A C G T
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGACCTGRSTAGT
TGACCTTGAT---
 A C G T A C T G C G T A A T G C A G T C A C G T C T A G C T A G A T C G A C G T C T G A A C T G A C G T
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGACCTGRSTAGT
TGACCTARTT---
 A C G T A C T G C G T A A T G C A G T C A C G T C T A G C T A G A T C G A C G T C T G A A C T G A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGACCTGRSTAGT
GTGACCTT------
 A C G T A C G T A C T G C G T A A T G C A G T C A C G T C T A G C T A G A T C G A C G T C T G A A C T G A C G T
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TGACCTGRSTAGT
NNNNTGACCCGGCGCG-
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A T G C A G T C A C G T C T A G C T A G A T C G A C G T C T G A A C T G A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGACCTGRSTAGT
NTGACCTTGA----
 A C G T A C G T A C T G C G T A A T G C A G T C A C G T C T A G C T A G A T C G A C G T C T G A A C T G A C G T
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGACCTGRSTAGT
TTGACCTANTTATN
 A C G T A C G T A C T G C G T A A T G C A G T C A C G T C T A G C T A G A T C G A C G T C T G A A C T G A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGACCTGRSTAGT
CTGACCTTTG----
 A C G T A C G T A C T G C G T A A T G C A G T C A C G T C T A G C T A G A T C G A C G T C T G A A C T G A C G T
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGACCTGRSTAGT
ATGACCTTGA----
 A C G T A C G T A C T G C G T A A T G C A G T C A C G T C T A G C T A G A T C G A C G T C T G A A C T G A C G T
C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A A C G T A C G T A C G T A C G T