Information for 2-CTCCAAAGCCCTT (Motif 3)

G T A C A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C G T
Reverse Opposite:
C G T A C G T A C T A G C T A G A C T G A G T C A C G T A C G T A C G T A C T G C T A G C G T A A C T G
p-value:1e-11
log p-value:-2.542e+01
Information Content per bp:1.941
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.14%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.0 +/- 18.2bp
Average Position of motif in Background73.7 +/- 15.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GFY(?)/Promoter/Homer

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTCCAAAGCCCTT
ACTACAATTCCC--
 A C G T G T A C A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C G T
T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTCCAAAGCCCTT
ACATCAAAGG----
 A C G T G T A C A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C G T
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTCCAAAGCCCTT
ACWTCAAAGG----
 A C G T G T A C A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C G T
C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CTCCAAAGCCCTT
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T G T A C A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:5
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CTCCAAAGCCCTT
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T G T A C A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CTCCAAAGCCCTT----
-CTTTAAGTACTTAATG
 G T A C A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

Crx/MA0467.1/Jaspar

Match Rank:7
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CTCCAAAGCCCTT-
---CTAATCCTCTT
 G T A C A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CTCCAAAGCCCTT
-NTCAAGGTCA--
 G T A C A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C G T
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CTCCAAAGCCCTT
AAAGATCAAAGGAA--
 A C G T A C G T A C G T G T A C A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C G T
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.50
Offset:5
Orientation:forward strand
Alignment:CTCCAAAGCCCTT--
-----AAGCACTTAA
 G T A C A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A