Information for 1-AGCAGAACAGAGG (Motif 2)

C G T A A C T G A G T C C G T A A C T G C T G A C T G A A G T C C G T A A C T G C G T A A C T G A C T G
Reverse Opposite:
A G T C G T A C A C G T A G T C A C G T A C T G A G C T A G C T A G T C A C G T A C T G A G T C A C G T
p-value:1e-11
log p-value:-2.542e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.14%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.8 +/- 14.7bp
Average Position of motif in Background30.4 +/- 10.4bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGCAGAACAGAGG-
AACACCAAAACAAAGGA
 A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G C T G A C T G A A G T C C G T A A C T G C G T A A C T G A C T G A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:2
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:AGCAGAACAGAGG--
-----AACAGATGGT
 C G T A A C T G A G T C C G T A A C T G C T G A C T G A A G T C C G T A A C T G C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AGCAGAACAGAGG--
-----AACAGATGGC
 C G T A A C T G A G T C C G T A A C T G C T G A C T G A A G T C C G T A A C T G C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGCAGAACAGAGG----
AGAAGAACAAAGGACTA
 C G T A A C T G A G T C C G T A A C T G C T G A C T G A A G T C C G T A A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGCAGAACAGAGG------
--AAGGCCAGATGGTCCGG
 C G T A A C T G A G T C C G T A A C T G C T G A C T G A A G T C C G T A A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AGCAGAACAGAGG
---AAAACAAAGG
 C G T A A C T G A G T C C G T A A C T G C T G A C T G A A G T C C G T A A C T G C G T A A C T G A C T G
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCAGAACAGAGG----
ATAAGAACAAAGGACTA
 C G T A A C T G A G T C C G T A A C T G C T G A C T G A A G T C C G T A A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0047.1_Myf6_1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGCAGAACAGAGG----
-GAAGAACAGGTGTCCG
 C G T A A C T G A G T C C G T A A C T G C T G A C T G A A G T C C G T A A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T T C A G T C G A C T G A A T C G T C G A C T G A A G T C C G T A A T C G A C T G G A C T A C T G A C G T A G T C G A T C A C T G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGCAGAACAGAGG
---GGAACAAAGR
 C G T A A C T G A G T C C G T A A C T G C T G A C T G A A G T C C G T A A C T G C G T A A C T G A C T G
A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGCAGAACAGAGG---
-GTAGGGCAAAGGTCA
 C G T A A C T G A G T C C G T A A C T G C T G A C T G A A G T C C G T A A C T G C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A