Information for 1-GTTCTATTCATCATGA (Motif 1)

A C T G A C G T A C G T A T G C A C G T C T G A A C G T A C G T A T G C C G T A A C G T A G T C G C T A A G C T C T A G C T G A
Reverse Opposite:
A G C T A G T C C T G A C G A T A C T G G T C A A C G T A T C G C G T A C G T A A G C T C G T A A T C G C G T A C G T A A G T C
p-value:1e-11
log p-value:-2.711e+01
Information Content per bp:1.898
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.67%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets27.8 +/- 19.2bp
Average Position of motif in Background36.1 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0194.1_Zbtb12_2/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GTTCTATTCATCATGA
AGNGTTCTAATGANN----
 A C G T A C G T A C G T A C T G A C G T A C G T A T G C A C G T C T G A A C G T A C G T A T G C C G T A A C G T A G T C G C T A A G C T C T A G C T G A
G C T A T C A G T A G C C A T G C A G T C A G T G T A C A G C T G C T A G C T A A G C T T A C G C T G A A C G T C G T A A C G T A C G T A C G T A C G T

PH0017.1_Cux1_2/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GTTCTATTCATCATGA---
----TAGTGATCATCATTA
 A C T G A C G T A C G T A T G C A C G T C T G A A C G T A C G T A T G C C G T A A C G T A G T C G C T A A G C T C T A G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GTTCTATTCATCATGA
--GYCATCMATCAT--
 A C T G A C G T A C G T A T G C A C G T C T G A A C G T A C G T A T G C C G T A A C G T A G T C G C T A A G C T C T A G C T G A
A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GTTCTATTCATCATGA
---NTATYGATCH---
 A C T G A C G T A C G T A T G C A C G T C T G A A C G T A C G T A T G C C G T A A C G T A G T C G C T A A G C T C T A G C T G A
A C G T A C G T A C G T C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GTTCTATTCATCATGA
---TCATCAATCA---
 A C T G A C G T A C G T A T G C A C G T C T G A A C G T A C G T A T G C C G T A A C G T A G T C G C T A A G C T C T A G C T G A
A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T

PB0108.1_Atf1_2/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GTTCTATTCATCATGA
--NTTATTCGTCATNC
 A C T G A C G T A C G T A T G C A C G T C T G A A C G T A C G T A T G C C G T A A C G T A G T C G C T A A G C T C T A G C T G A
A C G T A C G T C A T G G C A T G C A T T C G A G A C T C A G T A G T C T A C G G A C T G A T C T C G A A G C T G A C T A T G C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GTTCTATTCATCATGA
-GHATATKCAT-----
 A C T G A C G T A C G T A T G C A C G T C T G A A C G T A C G T A T G C C G T A A C G T A G T C G C T A A G C T C T A G C T G A
A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GTTCTATTCATCATGA-
---ACATTCATGACACG
 A C T G A C G T A C G T A T G C A C G T C T G A A C G T A C G T A T G C C G T A A C G T A G T C G C T A A G C T C T A G C T G A A C G T
A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

CUX1/MA0754.1/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GTTCTATTCATCATGA
---NTATCGATTA---
 A C T G A C G T A C G T A T G C A C G T C T G A A C G T A C G T A T G C C G T A A C G T A G T C G C T A A G C T C T A G C T G A
A C G T A C G T A C G T C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A A C G T A C G T A C G T

PB0074.1_Sox8_1/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GTTCTATTCATCATGA
GTATCTATTGTTCTTTA
 A C G T A C T G A C G T A C G T A T G C A C G T C T G A A C G T A C G T A T G C C G T A A C G T A G T C G C T A A G C T C T A G C T G A
C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A