Information for 19-CCCAGTGGGG (Motif 16)

T G A C G T A C G T A C T G C A A T C G G A C T C T A G C A T G T C A G T C A G
Reverse Opposite:
A G T C A G T C G T A C G A T C C T G A T A G C A C G T C A T G C A T G A C T G
p-value:1e-16
log p-value:-3.800e+01
Information Content per bp:1.664
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif6.42%
Number of Background Sequences with motif477.7
Percentage of Background Sequences with motif1.30%
Average Position of motif in Targets44.9 +/- 24.5bp
Average Position of motif in Background50.4 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0101.1_Zic1_1/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CCCAGTGGGG-
CACCCCCGGGGGGG
 A C G T A C G T A C G T T G A C G T A C G T A C T G C A A T C G G A C T C T A G C A T G T C A G T C A G A C G T
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGTGGGG----
DCHCAGCAGGRGGCC
 A C G T T G A C G T A C G T A C T G C A A T C G G A C T C T A G C A T G T C A G T C A G A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0102.1_Zic2_1/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CCCAGTGGGG-
ACCCCCCCGGGGGGN
 A C G T A C G T A C G T A C G T T G A C G T A C G T A C T G C A A T C G G A C T C T A G C A T G T C A G T C A G A C G T
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGTGGGG
DCTCAGCAGG-
 A C G T T G A C G T A C G T A C T G C A A T C G G A C T C T A G C A T G T C A G T C A G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGTGGGG----
NCNCAGCGGGGGGTC
 A C G T T G A C G T A C G T A C T G C A A T C G G A C T C T A G C A T G T C A G T C A G A C G T A C G T A C G T A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

ZIC3/MA0697.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGTGGGG----
NCGCAGCGGGGGGTC
 A C G T T G A C G T A C G T A C T G C A A T C G G A C T C T A G C A T G T C A G T C A G A C G T A C G T A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCCAGTGGGG----
CACAGCGGGGGGTC
 T G A C G T A C G T A C T G C A A T C G G A C T C T A G C A T G T C A G T C A G A C G T A C G T A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

PB0103.1_Zic3_1/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CCCAGTGGGG-
NCCCCCCCGGGGGGN
 A C G T A C G T A C G T A C G T T G A C G T A C G T A C T G C A A T C G G A C T C T A G C A T G T C A G T C A G A C G T
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCCAGTGGGG--
CACAGCAGGGGG
 T G A C G T A C G T A C T G C A A T C G G A C T C T A G C A T G T C A G T C A G A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CCCAGTGGGG--
CCACACAGCAGGAGA
 A C G T A C G T A C G T T G A C G T A C G T A C T G C A A T C G G A C T C T A G C A T G T C A G T C A G A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A