Information for 11-HGAGCCAATGGCGAHD (Motif 16)

G T C A A C T G C T G A A C T G G T A C A T G C C T G A C G T A C G A T C T A G A C T G A T G C C T A G T C G A G A T C C T G A
Reverse Opposite:
G A C T C A T G A G C T A G T C A T C G A G T C A G T C C G T A A C G T A G C T A T C G A C T G A G T C A G C T A G T C C A G T
p-value:1e-11
log p-value:-2.578e+01
Information Content per bp:1.772
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.0 +/- 26.1bp
Average Position of motif in Background23.8 +/- 6.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:HGAGCCAATGGCGAHD
-AAAACAATGG-----
 G T C A A C T G C T G A A C T G G T A C A T G C C T G A C G T A C G A T C T A G A C T G A T G C C T A G T C G A G A T C C T G A
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:HGAGCCAATGGCGAHD
--AGCCAATCGG----
 G T C A A C T G C T G A A C T G G T A C A T G C C T G A C G T A C G A T C T A G A C T G A T G C C T A G T C G A G A T C C T G A
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:HGAGCCAATGGCGAHD
---RACAAWGG-----
 G T C A A C T G C T G A A C T G G T A C A T G C C T G A C G T A C G A T C T A G A C T G A T G C C T A G T C G A G A T C C T G A
A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:HGAGCCAATGGCGAHD
---AACAAAGG-----
 G T C A A C T G C T G A A C T G G T A C A T G C C T G A C G T A C G A T C T A G A C T G A T G C C T A G T C G A G A T C C T G A
A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.67
Offset:2
Orientation:forward strand
Alignment:HGAGCCAATGGCGAHD
--RAACAATGGN----
 G T C A A C T G C T G A A C T G G T A C A T G C C T G A C G T A C G A T C T A G A C T G A T G C C T A G T C G A G A T C C T G A
A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-HGAGCCAATGGCGAHD
CTCACACAATGGCGC--
 A C G T G T C A A C T G C T G A A C T G G T A C A T G C C T G A C G T A C G A T C T A G A C T G A T G C C T A G T C G A G A T C C T G A
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:HGAGCCAATGGCGAHD
-AAAACAAAGG-----
 G T C A A C T G C T G A A C T G G T A C A T G C C T G A C G T A C G A T C T A G A C T G A T G C C T A G T C G A G A T C C T G A
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:HGAGCCAATGGCGAHD
-VRAACAATGG-----
 G T C A A C T G C T G A A C T G G T A C A T G C C T G A C G T A C G A T C T A G A C T G A T G C C T A G T C G A G A T C C T G A
A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-HGAGCCAATGGCGAHD
NNTNNACAATGGGANNN
 A C G T G T C A A C T G C T G A A C T G G T A C A T G C C T G A C G T A C G A T C T A G A C T G A T G C C T A G T C G A G A T C C T G A
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:HGAGCCAATGGCGAHD
-VRRACAAWGG-----
 G T C A A C T G C T G A A C T G G T A C A T G C C T G A C G T A C G A T C T A G A C T G A T G C C T A G T C G A G A T C C T G A
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T