Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-172 | -3.964e+02 | 0.0000 | 250.0 | 32.94% | 1523.6 | 3.24% | motif file (matrix) |
svg |
2 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-165 | -3.820e+02 | 0.0000 | 204.0 | 26.88% | 887.5 | 1.89% | motif file (matrix) |
svg |
3 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-147 | -3.402e+02 | 0.0000 | 245.0 | 32.28% | 1841.9 | 3.92% | motif file (matrix) |
svg |
4 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-133 | -3.082e+02 | 0.0000 | 249.0 | 32.81% | 2215.5 | 4.72% | motif file (matrix) |
svg |
5 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-122 | -2.815e+02 | 0.0000 | 335.0 | 44.14% | 4985.8 | 10.61% | motif file (matrix) |
svg |
6 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-113 | -2.607e+02 | 0.0000 | 116.0 | 15.28% | 324.0 | 0.69% | motif file (matrix) |
svg |
7 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-109 | -2.525e+02 | 0.0000 | 101.0 | 13.31% | 215.3 | 0.46% | motif file (matrix) |
svg |
8 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-100 | -2.307e+02 | 0.0000 | 132.0 | 17.39% | 627.6 | 1.34% | motif file (matrix) |
svg |
9 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-91 | -2.118e+02 | 0.0000 | 193.0 | 25.43% | 1941.7 | 4.13% | motif file (matrix) |
svg |
10 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-86 | -1.998e+02 | 0.0000 | 205.0 | 27.01% | 2393.0 | 5.09% | motif file (matrix) |
svg |
11 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-86 | -1.990e+02 | 0.0000 | 189.0 | 24.90% | 1995.1 | 4.25% | motif file (matrix) |
svg |
12 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-86 | -1.990e+02 | 0.0000 | 273.0 | 35.97% | 4455.5 | 9.48% | motif file (matrix) |
svg |
13 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-83 | -1.930e+02 | 0.0000 | 148.0 | 19.50% | 1149.1 | 2.45% | motif file (matrix) |
svg |
14 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-83 | -1.918e+02 | 0.0000 | 229.0 | 30.17% | 3188.2 | 6.79% | motif file (matrix) |
svg |
15 |
| E-box(bHLH)/Promoter/Homer | 1e-79 | -1.831e+02 | 0.0000 | 89.0 | 11.73% | 299.1 | 0.64% | motif file (matrix) |
svg |
16 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-31 | -7.295e+01 | 0.0000 | 104.0 | 13.70% | 1618.2 | 3.44% | motif file (matrix) |
svg |
17 |
| CRE(bZIP)/Promoter/Homer | 1e-20 | -4.671e+01 | 0.0000 | 58.0 | 7.64% | 789.4 | 1.68% | motif file (matrix) |
svg |
18 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-9 | -2.089e+01 | 0.0000 | 24.0 | 3.16% | 314.3 | 0.67% | motif file (matrix) |
svg |
19 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-7 | -1.779e+01 | 0.0000 | 213.0 | 28.06% | 9253.9 | 19.70% | motif file (matrix) |
svg |
20 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-7 | -1.647e+01 | 0.0000 | 110.0 | 14.49% | 4047.1 | 8.62% | motif file (matrix) |
svg |
21 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-7 | -1.615e+01 | 0.0000 | 59.0 | 7.77% | 1724.6 | 3.67% | motif file (matrix) |
svg |
22 |
| Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer | 1e-6 | -1.545e+01 | 0.0000 | 48.0 | 6.32% | 1301.4 | 2.77% | motif file (matrix) |
svg |
23 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-5 | -1.268e+01 | 0.0000 | 290.0 | 38.21% | 14301.0 | 30.44% | motif file (matrix) |
svg |
24 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-5 | -1.259e+01 | 0.0001 | 163.0 | 21.48% | 7169.6 | 15.26% | motif file (matrix) |
svg |
25 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-5 | -1.192e+01 | 0.0001 | 64.0 | 8.43% | 2204.2 | 4.69% | motif file (matrix) |
svg |
26 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-5 | -1.190e+01 | 0.0001 | 171.0 | 22.53% | 7691.5 | 16.37% | motif file (matrix) |
svg |
27 |
| GFY-Staf(?,Zf)/Promoter/Homer | 1e-4 | -1.054e+01 | 0.0004 | 12.0 | 1.58% | 168.9 | 0.36% | motif file (matrix) |
svg |
28 |
| COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer | 1e-4 | -9.886e+00 | 0.0007 | 101.0 | 13.31% | 4214.1 | 8.97% | motif file (matrix) |
svg |
29 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-4 | -9.640e+00 | 0.0008 | 28.0 | 3.69% | 757.5 | 1.61% | motif file (matrix) |
svg |
30 |
| CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-4 | -9.630e+00 | 0.0008 | 6.0 | 0.79% | 41.6 | 0.09% | motif file (matrix) |
svg |
31 |
| HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer | 1e-4 | -9.503e+00 | 0.0009 | 29.0 | 3.82% | 804.9 | 1.71% | motif file (matrix) |
svg |
32 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-3 | -8.924e+00 | 0.0015 | 32.0 | 4.22% | 959.6 | 2.04% | motif file (matrix) |
svg |
33 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-3 | -8.869e+00 | 0.0016 | 29.0 | 3.82% | 835.8 | 1.78% | motif file (matrix) |
svg |
34 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-3 | -8.440e+00 | 0.0023 | 24.0 | 3.16% | 651.0 | 1.39% | motif file (matrix) |
svg |
35 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-3 | -8.211e+00 | 0.0028 | 42.0 | 5.53% | 1450.9 | 3.09% | motif file (matrix) |
svg |
36 |
| YY1(Zf)/Promoter/Homer | 1e-3 | -7.704e+00 | 0.0046 | 12.0 | 1.58% | 229.2 | 0.49% | motif file (matrix) |
svg |
37 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-3 | -7.589e+00 | 0.0050 | 8.0 | 1.05% | 110.7 | 0.24% | motif file (matrix) |
svg |
38 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.238e+00 | 0.0069 | 46.0 | 6.06% | 1715.9 | 3.65% | motif file (matrix) |
svg |
39 |
| GFY(?)/Promoter/Homer | 1e-3 | -7.195e+00 | 0.0070 | 10.0 | 1.32% | 177.9 | 0.38% | motif file (matrix) |
svg |
40 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-3 | -7.158e+00 | 0.0071 | 28.0 | 3.69% | 886.4 | 1.89% | motif file (matrix) |
svg |
41 |
| NFY(CCAAT)/Promoter/Homer | 1e-3 | -7.132e+00 | 0.0071 | 46.0 | 6.06% | 1725.0 | 3.67% | motif file (matrix) |
svg |
42 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-2 | -6.707e+00 | 0.0106 | 25.0 | 3.29% | 781.3 | 1.66% | motif file (matrix) |
svg |
43 |
| HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer | 1e-2 | -6.672e+00 | 0.0107 | 29.0 | 3.82% | 962.0 | 2.05% | motif file (matrix) |
svg |
44 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.664e+00 | 0.0107 | 34.0 | 4.48% | 1191.1 | 2.54% | motif file (matrix) |
svg |
45 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-2 | -6.662e+00 | 0.0107 | 30.0 | 3.95% | 1007.7 | 2.15% | motif file (matrix) |
svg |
46 |
| NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-2 | -6.596e+00 | 0.0108 | 29.0 | 3.82% | 966.8 | 2.06% | motif file (matrix) |
svg |
47 |
| Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.568e+00 | 0.0109 | 46.0 | 6.06% | 1774.4 | 3.78% | motif file (matrix) |
svg |
48 |
| RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-2 | -6.403e+00 | 0.0126 | 24.0 | 3.16% | 755.6 | 1.61% | motif file (matrix) |
svg |
49 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-2 | -6.082e+00 | 0.0170 | 25.0 | 3.29% | 819.3 | 1.74% | motif file (matrix) |
svg |
50 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-2 | -6.039e+00 | 0.0174 | 24.0 | 3.16% | 777.3 | 1.65% | motif file (matrix) |
svg |
51 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-2 | -6.038e+00 | 0.0174 | 15.0 | 1.98% | 395.9 | 0.84% | motif file (matrix) |
svg |
52 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-2 | -5.973e+00 | 0.0178 | 74.0 | 9.75% | 3275.2 | 6.97% | motif file (matrix) |
svg |
53 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-2 | -5.958e+00 | 0.0178 | 24.0 | 3.16% | 782.1 | 1.66% | motif file (matrix) |
svg |
54 |
| Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer | 1e-2 | -5.316e+00 | 0.0331 | 7.0 | 0.92% | 126.9 | 0.27% | motif file (matrix) |
svg |
55 |
| Sp1(Zf)/Promoter/Homer | 1e-2 | -5.297e+00 | 0.0331 | 31.0 | 4.08% | 1156.1 | 2.46% | motif file (matrix) |
svg |
56 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-2 | -5.200e+00 | 0.0358 | 29.0 | 3.82% | 1068.0 | 2.27% | motif file (matrix) |
svg |
57 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -5.183e+00 | 0.0358 | 18.0 | 2.37% | 563.6 | 1.20% | motif file (matrix) |
svg |
58 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-2 | -5.074e+00 | 0.0393 | 11.0 | 1.45% | 277.7 | 0.59% | motif file (matrix) |
svg |
59 |
| NRF(NRF)/Promoter/Homer | 1e-2 | -4.933e+00 | 0.0444 | 25.0 | 3.29% | 899.3 | 1.91% | motif file (matrix) |
svg |
60 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -4.928e+00 | 0.0444 | 66.0 | 8.70% | 2993.1 | 6.37% | motif file (matrix) |
svg |
61 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-2 | -4.874e+00 | 0.0456 | 21.0 | 2.77% | 717.1 | 1.53% | motif file (matrix) |
svg |
62 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-2 | -4.791e+00 | 0.0487 | 25.0 | 3.29% | 910.8 | 1.94% | motif file (matrix) |
svg |
63 |
| NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer | 1e-2 | -4.775e+00 | 0.0487 | 5.0 | 0.66% | 76.7 | 0.16% | motif file (matrix) |
svg |
64 |
| KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer | 1e-2 | -4.753e+00 | 0.0490 | 82.0 | 10.80% | 3887.9 | 8.28% | motif file (matrix) |
svg |
65 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.749e+00 | 0.0490 | 14.0 | 1.84% | 414.8 | 0.88% | motif file (matrix) |
svg |
66 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -4.678e+00 | 0.0513 | 105.0 | 13.83% | 5176.2 | 11.02% | motif file (matrix) |
svg |