Information for 6-GCVBCGCCBAGTGGCC (Motif 4)

C T A G A G T C T C A G A G T C A G T C C T A G A G T C A G T C A G C T C G T A A T C G A G C T A C T G C T A G A G T C G T A C
Reverse Opposite:
A C T G A C T G G A T C A G T C C T G A T A G C A C G T T C G A A C T G C T A G A G T C A C T G T C A G A G T C A C T G A G T C
p-value:1e-14
log p-value:-3.261e+01
Information Content per bp:1.799
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.7 +/- 25.7bp
Average Position of motif in Background29.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCVBCGCCBAGTGGCC-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T C T A G A G T C T C A G A G T C A G T C C T A G A G T C A G T C A G C T C G T A A T C G A G C T A C T G C T A G A G T C G T A C A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCVBCGCCBAGTGGCC-
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T C T A G A G T C T C A G A G T C A G T C C T A G A G T C A G T C A G C T C G T A A T C G A G C T A C T G C T A G A G T C G T A C A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GCVBCGCCBAGTGGCC
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T C T A G A G T C T C A G A G T C A G T C C T A G A G T C A G T C A G C T C G T A A T C G A G C T A C T G C T A G A G T C G T A C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCVBCGCCBAGTGGCC
GGCCACRCCCMK-----
 A C G T C T A G A G T C T C A G A G T C A G T C C T A G A G T C A G T C A G C T C G T A A T C G A G C T A C T G C T A G A G T C G T A C
C T A G C T A G T G A C G T A C T G C A A G T C C T A G A G T C A G T C A G T C G T C A C A T G A C G T A C G T A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:5
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GCVBCGCCBAGTGGCC---
---TGACCCAGTGACCTAC
 C T A G A G T C T C A G A G T C A G T C C T A G A G T C A G T C A G C T C G T A A T C G A G C T A C T G C T A G A G T C G T A C A C G T A C G T A C G T
A C G T A C G T A C G T G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCVBCGCCBAGTGGCC
GCTCCGCCCMCY----
 C T A G A G T C T C A G A G T C A G T C C T A G A G T C A G T C A G C T C G T A A T C G A G C T A C T G C T A G A G T C G T A C
C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T A C G T A C G T A C G T A C G T

Klf4/MA0039.2/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCVBCGCCBAGTGGCC
GCCCCACCCA------
 C T A G A G T C T C A G A G T C A G T C C T A G A G T C A G T C A G C T C G T A A T C G A G C T A C T G C T A G A G T C G T A C
T C A G T G A C G A T C T G A C G T A C C T G A T A G C A G T C A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GCVBCGCCBAGTGGCC-
---CCGCCCAAGGGCAG
 C T A G A G T C T C A G A G T C A G T C C T A G A G T C A G T C A G C T C G T A A T C G A G C T A C T G C T A G A G T C G T A C A C G T
A C G T A C G T A C G T A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCVBCGCCBAGTGGCC
GCCMCRCCCH------
 C T A G A G T C T C A G A G T C A G T C C T A G A G T C A G T C A G C T C G T A A T C G A G C T A C T G C T A G A G T C G T A C
C T A G G T A C G A T C G T C A G A T C C T G A A G T C A G T C A G T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCVBCGCCBAGTGGCC
GCCACACCCA------
 C T A G A G T C T C A G A G T C A G T C C T A G A G T C A G T C A G C T C G T A A T C G A G C T A C T G C T A G A G T C G T A C
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T