Information for 13-CCAGAGTAAC (Motif 36)

A G T C A G T C C G T A A C T G C G T A A C T G A C G T C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T C G T A A G T C A C G T A G T C A C G T A C T G A C T G
p-value:1e-6
log p-value:-1.418e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.3 +/- 14.1bp
Average Position of motif in Background52.4 +/- 21.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCAGAGTAAC--
SCCTAGCAACAG
 A G T C A G T C C G T A A C T G C G T A A C T G A C G T C G T A C G T A A G T C A C G T A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCAGAGTAAC---
TACCATAGCAACGGT
 A C G T A C G T A G T C A G T C C G T A A C T G C G T A A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCAGAGTAAC---
CCGCATAGCAACGGA
 A C G T A C G T A G T C A G T C C G T A A C T G C G T A A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CCAGAGTAAC-------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCAGAGTAAC
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A A C T G A C G T C G T A C G T A A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Spz1/MA0111.1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCAGAGTAAC---
--AGGGTAACAGC
 A G T C A G T C C G T A A C T G C G T A A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T
A C G T A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C

RFX5/MA0510.2/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CCAGAGTAAC-
NGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A A C T G A C G T C G T A C G T A A G T C A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCAGAGTAAC-
TTGCCATGGCAACC
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A A C T G A C G T C G T A C G T A A G T C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCAGAGTAAC-
TTGCCATGGCAACN
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A A C T G A C G T C G T A C G T A A G T C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

RFX3/MA0798.1/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CCAGAGTAAC-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A A C T G A C G T C G T A C G T A A G T C A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G