Information for 11-TCCCTAATCCCAG (Motif 13)

A C G T A G T C A G T C G T A C A C G T C G T A C G T A A G C T A G T C G T A C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G C A T G A C T G C T G A A C G T A C G T G T C A A C T G A C T G A C T G C G T A
p-value:1e-9
log p-value:-2.183e+01
Information Content per bp:1.928
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.4 +/- 28.3bp
Average Position of motif in Background60.2 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PITX3/MA0714.1/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TCCCTAATCCCAG
--CTTAATCCC--
 A C G T A G T C A G T C G T A C A C G T C G T A C G T A A G C T A G T C G T A C A G T C C G T A A C T G
A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TCCCTAATCCCAG
--CCTAATCCGC-
 A C G T A G T C A G T C G T A C A C G T C G T A C G T A A G C T A G T C G T A C A G T C C G T A A C T G
A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T

GSC/MA0648.1/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TCCCTAATCCCAG
--GCTAATCCCC-
 A C G T A G T C A G T C G T A C A C G T C G T A C G T A A G C T A G T C G T A C A G T C C G T A A C T G
A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:4
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:TCCCTAATCCCAG
---YTAATCCY--
 A C G T A G T C A G T C G T A C A C G T C G T A C G T A A G C T A G T C G T A C A G T C C G T A A C T G
A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:5
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TCCCTAATCCCAG
---TTAATCCC--
 A C G T A G T C A G T C G T A C A C G T C G T A C G T A A G C T A G T C G T A C A G T C C G T A A C T G
A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TCCCTAATCCCAG
--GCTAATCC---
 A C G T A G T C A G T C G T A C A C G T C G T A C G T A A G C T A G T C G T A C A G T C C G T A A C T G
A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TCCCTAATCCCAG
--NYTAATCCYB-
 A C G T A G T C A G T C G T A C A C G T C G T A C G T A A G C T A G T C G T A C A G T C C G T A A C T G
A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TCCCTAATCCCAG
----TAATCCCN-
 A C G T A G T C A G T C G T A C A C G T C G T A C G T A A G C T A G T C G T A C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T

PH0035.1_Gsc/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TCCCTAATCCCAG--
AATCGTTAATCCCTTTA
 A C G T A C G T A C G T A G T C A G T C G T A C A C G T C G T A C G T A A G C T A G T C G T A C A G T C C G T A A C T G A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

OTX2/MA0712.1/Jaspar

Match Rank:10
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TCCCTAATCCCAG
---TTAATCCT--
 A C G T A G T C A G T C G T A C A C G T C G T A C G T A A G C T A G T C G T A C A G T C C G T A A C T G
A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T