Information for 1-TKNCCWTATAWGG (Motif 1)

G C A T A C T G A T C G G T A C A G T C G C A T C G A T C G T A G C A T G C T A C G A T C T A G A T C G
Reverse Opposite:
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G T A A C T G A C T G T A G C T G A C C G T A
p-value:1e-161
log p-value:-3.725e+02
Information Content per bp:1.642
Number of Target Sequences with motif103.0
Percentage of Target Sequences with motif12.94%
Number of Background Sequences with motif68.7
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets53.8 +/- 16.6bp
Average Position of motif in Background53.9 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:1
Score:0.99
Offset:1
Orientation:reverse strand
Alignment:TKNCCWTATAWGG
-TNCCATATATGG
 G C A T A C T G A T C G G T A C A G T C G C A T C G A T C G T A G C A T G C T A C G A T C T A G A T C G
A C G T C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G

PB0078.1_Srf_1/Jaspar

Match Rank:2
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:TKNCCWTATAWGG--
-TNCCATATATGGNA
 G C A T A C T G A T C G G T A C A G T C G C A T C G A T C G T A G C A T G C T A C G A T C T A G A T C G A C G T A C G T
A C G T C A G T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A C G A T C T A G C A T G C G T A C G T A

SRF/MA0083.3/Jaspar

Match Rank:3
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:TKNCCWTATAWGG---
TGNCCATATATGGTCA
 G C A T A C T G A T C G G T A C A G T C G C A T C G A T C G T A G C A T G C T A C G A T C T A G A T C G A C G T A C G T A C G T
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

MF0008.1_MADS_class/Jaspar

Match Rank:4
Score:0.86
Offset:3
Orientation:forward strand
Alignment:TKNCCWTATAWGG
---CCATATATGG
 G C A T A C T G A T C G G T A C A G T C G C A T C G A T C G T A G C A T G C T A C G A T C T A G A T C G
A C G T A C G T A C G T G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TKNCCWTATAWGG
-GNCTATAAAAGG
 G C A T A C T G A T C G G T A C A G T C G C A T C G A T C G T A G C A T G C T A C G A T C T A G A T C G
A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

PB0184.1_Tbp_2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TKNCCWTATAWGG-
GNNCGCTTAAATCGG
 A C G T G C A T A C T G A T C G G T A C A G T C G C A T C G A T C G T A G C A T G C T A C G A T C T A G A T C G A C G T
C A T G T A C G C A G T G T A C A T C G T A G C C G A T C A G T C G T A C G T A C T G A G C A T A T G C T A C G A C T G

HLTF/MA0109.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TKNCCWTATAWGG
-AACCTTATAT--
 G C A T A C T G A T C G G T A C A G T C G C A T C G A T C G T A G C A T G C T A C G A T C T A G A T C G
A C G T C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T A C G T A C G T

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TKNCCWTATAWGG
--NCCTTATCTG-
 G C A T A C T G A T C G G T A C A G T C G C A T C G A T C G T A G C A T G C T A C G A T C T A G A T C G
A C G T A C G T A G C T A G T C A T G C A C G T A C G T C G T A A C G T A G T C C G A T A T C G A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TKNCCWTATAWGG-
--GCTATTTTTGGM
 G C A T A C T G A T C G G T A C A G T C G C A T C G A T C G T A G C A T G C T A C G A T C T A G A T C G A C G T
A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G A C T G C A T C G A T C T A G C A T G T G A C

PB0128.1_Gcm1_2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TKNCCWTATAWGG-
NTCNTCCCCTATNNGNN
 A C G T A C G T A C G T G C A T A C T G A T C G G T A C A G T C G C A T C G A T C G T A G C A T G C T A C G A T C T A G A T C G A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A