Information for 3-WATGGCCACHRGAGGA (Motif 3)

C G A T C T G A A C G T A C T G A C T G A T G C A G T C G T C A A G T C G C A T C T G A A C T G C G T A C A T G C T A G T C G A
Reverse Opposite:
A G C T A G T C G T A C C G A T A G T C A G C T C G T A C T A G C A G T C T A G A T C G G T A C T G A C G T C A A G C T G C T A
p-value:1e-17
log p-value:-3.929e+01
Information Content per bp:1.679
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.4 +/- 19.0bp
Average Position of motif in Background37.5 +/- 17.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:WATGGCCACHRGAGGA------
--TGGCCACCAGGTGGCACTNT
 C G A T C T G A A C G T A C T G A C T G A T G C A G T C G T C A A G T C G C A T C T G A A C T G C G T A C A T G C T A G T C G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:WATGGCCACHRGAGGA-----
--TGGCCACCAGGGGGCGCTA
 C G A T C T G A A C G T A C T G A C T G A T G C A G T C G T C A A G T C G C A T C T G A A C T G C G T A C A T G C T A G T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:WATGGCCACHRGAGGA--------
----GCCASCAGGGGGCGCYVNNG
 C G A T C T G A A C G T A C T G A C T G A T G C A G T C G T C A A G T C G C A T C T G A A C T G C G T A C A T G C T A G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PH0111.1_Nkx2-2/Jaspar

Match Rank:4
Score:0.53
Offset:1
Orientation:forward strand
Alignment:WATGGCCACHRGAGGA--
-ATAACCACTTGAAAATT
 C G A T C T G A A C G T A C T G A C T G A T G C A G T C G T C A A G T C G C A T C T G A A C T G C G T A C A T G C T A G T C G A A C G T A C G T
A C G T G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

MF0001.1_ETS_class/Jaspar

Match Rank:5
Score:0.52
Offset:7
Orientation:forward strand
Alignment:WATGGCCACHRGAGGA
-------ACCGGAAG-
 C G A T C T G A A C G T A C T G A C T G A T G C A G T C G T C A A G T C G C A T C T G A A C T G C G T A C A T G C T A G T C G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T A G C T G A C C A T G C T A G C T G A G C T A T C A G A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:WATGGCCACHRGAGGA
-NTGCCCANNGGTNA-
 C G A T C T G A A C G T A C T G A C T G A T G C A G T C G T C A A G T C G C A T C T G A A C T G C G T A C A T G C T A G T C G A
A C G T T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.51
Offset:6
Orientation:forward strand
Alignment:WATGGCCACHRGAGGA--
------CACAGCAGGGGG
 C G A T C T G A A C G T A C T G A C T G A T G C A G T C G T C A A G T C G C A T C T G A A C T G C G T A C A T G C T A G T C G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0101.1_Zic1_1/Jaspar

Match Rank:8
Score:0.49
Offset:3
Orientation:forward strand
Alignment:WATGGCCACHRGAGGA-
---CACCCCCGGGGGGG
 C G A T C T G A A C G T A C T G A C T G A T G C A G T C G T C A A G T C G C A T C T G A A C T G C G T A C A T G C T A G T C G A A C G T
A C G T A C G T A C G T A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.49
Offset:3
Orientation:forward strand
Alignment:WATGGCCACHRGAGGA
---GTCCCCAGGGGA-
 C G A T C T G A A C G T A C T G A C T G A T G C A G T C G T C A A G T C G C A T C T G A A C T G C G T A C A T G C T A G T C G A
A C G T A C G T A C G T C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A A C G T

PLAG1/MA0163.1/Jaspar

Match Rank:10
Score:0.48
Offset:1
Orientation:forward strand
Alignment:WATGGCCACHRGAGGA
-GGGGCCCAAGGGGG-
 C G A T C T G A A C G T A C T G A C T G A T G C A G T C G T C A A G T C G C A T C T G A A C T G C G T A C A T G C T A G T C G A
A C G T A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G A C G T