Information for 4-GGCYAGAGAGGCC (Motif 4)

C A T G A T C G T A G C G A T C C T G A A C T G C G T A T A C G G T C A C A T G C A T G T G A C T A G C
Reverse Opposite:
A T C G A C T G G A T C G T A C C A G T A T G C A C G T A G T C A G C T C T A G A T C G A T G C G T A C
p-value:1e-27
log p-value:-6.266e+01
Information Content per bp:1.696
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif56.8
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets49.3 +/- 20.5bp
Average Position of motif in Background47.4 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GGCYAGAGAGGCC
--CCAGACRSVB-
 C A T G A T C G T A G C G A T C C T G A A C T G C G T A T A C G G T C A C A T G C A T G T G A C T A G C
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GGCYAGAGAGGCC
--CCAGACAG---
 C A T G A T C G T A G C G A T C C T G A A C T G C G T A T A C G G T C A C A T G C A T G T G A C T A G C
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GGCYAGAGAGGCC
--CTTGAGTGGCT
 C A T G A T C G T A G C G A T C C T G A A C T G C G T A T A C G G T C A C A T G C A T G T G A C T A G C
A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GGCYAGAGAGGCC-
CAAATCCAGACATCACA
 A C G T A C G T A C G T C A T G A T C G T A G C G A T C C T G A A C T G C G T A T A C G G T C A C A T G C A T G T G A C T A G C A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GGCYAGAGAGGCC
--BTBRAGTGSN-
 C A T G A T C G T A G C G A T C C T G A A C T G C G T A T A C G G T C A C A T G C A T G T G A C T A G C
A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GGCYAGAGAGGCC
AGGTGNCAGACAG---
 A C G T A C G T A C G T C A T G A T C G T A G C G A T C C T G A A C T G C G T A T A C G G T C A C A T G C A T G T G A C T A G C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGCYAGAGAGGCC
ATGCCAGACN----
 A C G T C A T G A T C G T A G C G A T C C T G A A C T G C G T A T A C G G T C A C A T G C A T G T G A C T A G C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GGCYAGAGAGGCC
---TTGAGTGSTT
 C A T G A T C G T A G C G A T C C T G A A C T G C G T A T A C G G T C A C A T G C A T G T G A C T A G C
A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGCYAGAGAGGCC
--CTYRAGTGSY-
 C A T G A T C G T A G C G A T C C T G A A C T G C G T A T A C G G T C A C A T G C A T G T G A C T A G C
A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGCYAGAGAGGCC
AGGTGHCAGACA----
 A C G T A C G T A C G T C A T G A T C G T A G C G A T C C T G A A C T G C G T A T A C G G T C A C A T G C A T G T G A C T A G C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T