Information for 3-AGAGGGCGCTGGT (Motif 3)

G C T A A C T G G T C A C A T G C T A G T A C G T A G C A T C G T A G C C A G T A C T G A C T G G A C T
Reverse Opposite:
C T G A G T A C A G T C G T C A A T C G T A G C A T C G A G T C A G T C G T A C C A G T G T A C C G A T
p-value:1e-17
log p-value:-4.107e+01
Information Content per bp:1.705
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.53%
Number of Background Sequences with motif77.6
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets54.1 +/- 22.4bp
Average Position of motif in Background47.5 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCGCTGGT-
AAGGKGRCGCAGGCA
 A C G T G C T A A C T G G T C A C A T G C T A G T A C G T A G C A T C G T A G C C A G T A C T G A C T G G A C T A C G T
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AGAGGGCGCTGGT-
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C T G G T C A C A T G C T A G T A C G T A G C A T C G T A G C C A G T A C T G A C T G G A C T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.61
Offset:-8
Orientation:forward strand
Alignment:--------AGAGGGCGCTGGT
TGGCCACCAGGGGGCGCTA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C T G G T C A C A T G C T A G T A C G T A G C A T C G T A G C C A G T A C T G A C T G G A C T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.61
Offset:-8
Orientation:reverse strand
Alignment:--------AGAGGGCGCTGGT
TGGCCACCAGGTGGCACTNT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C T G G T C A C A T G C T A G T A C G T A G C A T C G T A G C C A G T A C T G A C T G G A C T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AGAGGGCGCTGGT
AACAGATGGC------
 A C G T A C G T A C G T G C T A A C T G G T C A C A T G C T A G T A C G T A G C A T C G T A G C C A G T A C T G A C T G G A C T
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AGAGGGCGCTGGT
----GGCGCGCT-
 G C T A A C T G G T C A C A T G C T A G T A C G T A G C A T C G T A G C C A G T A C T G A C T G G A C T
A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGAGGGCGCTGGT
NNNAAGGGGGCGGGNNN
 A C G T A C G T A C G T A C G T G C T A A C T G G T C A C A T G C T A G T A C G T A G C A T C G T A G C C A G T A C T G A C T G G A C T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

PB0009.1_E2F3_1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCGCTGGT-
ATAAGGGCGCGCGAT
 A C G T G C T A A C T G G T C A C A T G C T A G T A C G T A G C A T C G T A G C C A G T A C T G A C T G G A C T A C G T
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

PB0010.1_Egr1_1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGAGGGCGCTGGT
ANTGCGGGGGCGGN-
 A C G T A C G T G C T A A C T G G T C A C A T G C T A G T A C G T A G C A T C G T A G C C A G T A C T G A C T G G A C T
G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGAGGGCGCTGGT--
AGATGCTRCTRCCHT
 G C T A A C T G G T C A C A T G C T A G T A C G T A G C A T C G T A G C C A G T A C T G A C T G G A C T A C G T A C G T
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T