Information for 15-CCATTCAAAG (Motif 29)

A G T C G A T C C G T A A C G T A C G T A T G C C G T A C G T A C T G A C T A G
Reverse Opposite:
G A T C A G C T C G A T A C G T A T C G C G T A C G T A A C G T C T A G C T A G
p-value:1e-8
log p-value:-2.008e+01
Information Content per bp:1.843
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.93%
Number of Background Sequences with motif130.8
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets48.3 +/- 24.1bp
Average Position of motif in Background51.5 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CCATTCAAAG
-NATTCAAAT
 A G T C G A T C C G T A A C G T A C G T A T G C C G T A C G T A C T G A C T A G
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----CCATTCAAAG-
NNCATTCATTCATNNN
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C C G T A A C G T A C G T A T G C C G T A C G T A C T G A C T A G A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CCATTCAAAG---
GACCACATTCATACAAT
 A C G T A C G T A C G T A C G T A G T C G A T C C G T A A C G T A C G T A T G C C G T A C G T A C T G A C T A G A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CCATTCAAAG----
ACATTCATGACACG
 A G T C G A T C C G T A A C G T A C G T A T G C C G T A C G T A C T G A C T A G A C G T A C G T A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0068.1_Sox1_1/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CCATTCAAAG---
AATCAATTCAATAATT
 A C G T A C G T A C G T A G T C G A T C C G T A A C G T A C G T A T G C C G T A C G T A C T G A C T A G A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

Dux/MA0611.1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCATTCAAAG
CCAATCAA--
 A G T C G A T C C G T A A C G T A C G T A T G C C G T A C G T A C T G A C T A G
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCATTCAAAG
CGGTTTCAAA-
 A C G T A G T C G A T C C G T A A C G T A C G T A T G C C G T A C G T A C T G A C T A G
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCATTCAAAG-
-ACATCAAAGG
 A G T C G A T C C G T A A C G T A C G T A T G C C G T A C G T A C T G A C T A G A C G T
A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CCATTCAAAG
ACTAGCCAATCA---
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C C G T A A C G T A C G T A T G C C G T A C G T A C T G A C T A G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCATTCAAAG
GGCCATTAAC--
 A C G T A C G T A G T C G A T C C G T A A C G T A C G T A T G C C G T A C G T A C T G A C T A G
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T