Information for 5-CCCTCTGTAGGGA (Motif 4)

A G T C A G T C A G T C A C G T A T G C A C G T A C T G A C G T C G T A A C T G A C T G A T C G C G T A
Reverse Opposite:
A C G T A T G C A G T C A G T C A C G T C G T A G T A C C G T A A T C G C G T A A C T G C T A G A C T G
p-value:1e-12
log p-value:-2.990e+01
Information Content per bp:1.938
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.5 +/- 16.7bp
Average Position of motif in Background80.0 +/- 2.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.58
Offset:-8
Orientation:forward strand
Alignment:--------CCCTCTGTAGGGA
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A T G C A C G T A C T G A C G T C G T A A C T G A C T G A T C G C G T A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCCTCTGTAGGGA-
NGCTTTCTAGGAAN
 A G T C A G T C A G T C A C G T A T G C A C G T A C T G A C G T C G T A A C T G A C T G A T C G C G T A A C G T
C G A T C A T G G T A C G A C T A G C T G A C T A G T C A G C T C G T A C T A G C A T G T C G A G C T A G T C A

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:3
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CCCTCTGTAGGGA--
---TCCCNNGGGACN
 A G T C A G T C A G T C A C G T A T G C A C G T A C T G A C G T C G T A A C T G A C T G A T C G C G T A A C G T A C G T
A C G T A C G T A C G T G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CCCTCTGTAGGGA
ACCATCTGTT----
 A C G T A G T C A G T C A G T C A C G T A T G C A C G T A C T G A C G T C G T A A C T G A C T G A T C G C G T A
T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CCCTCTGTAGGGA-
--CACAGCAGGGGG
 A G T C A G T C A G T C A C G T A T G C A C G T A C T G A C G T C G T A A C T G A C T G A T C G C G T A A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CCCTCTGTAGGGA
GCCATCTGTT----
 A C G T A G T C A G T C A G T C A C G T A T G C A C G T A C T G A C G T C G T A A C T G A C T G A T C G C G T A
T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:7
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----CCCTCTGTAGGGA-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A T G C A C G T A C T G A C G T C G T A A C T G A C T G A T C G C G T A A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CCCTCTGTAGGGA
AGGVNCCTTTGT-----
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A T G C A C G T A C T G A C G T C G T A A C T G A C T G A T C G C G T A
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTGTAGGGA
GACCCCCCGCTGTGC
 A C G T A C G T A G T C A G T C A G T C A C G T A T G C A C G T A C T G A C G T C G T A A C T G A C T G A T C G C G T A
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CCCTCTGTAGGGA
-CCTTTGTT----
 A G T C A G T C A G T C A C G T A T G C A C G T A C T G A C G T C G T A A C T G A C T G A T C G C G T A
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T