Information for 2-TGTTGCTAGGCAG (Motif 2)

C A G T A C T G A C G T C G A T C T A G A G T C G A C T C T G A C A T G A C T G A T G C C T G A T C A G
Reverse Opposite:
A G T C G A C T T A C G A G T C G T A C A G C T C T G A C T A G G A T C C G T A C G T A A G T C G T C A
p-value:1e-81
log p-value:-1.870e+02
Information Content per bp:1.664
Number of Target Sequences with motif90.0
Percentage of Target Sequences with motif10.49%
Number of Background Sequences with motif265.5
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets51.5 +/- 20.2bp
Average Position of motif in Background51.8 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-TGTTGCTAGGCAG
CTGTTGCTAGGS--
 A C G T C A G T A C T G A C G T C G A T C T A G A G T C G A C T C T G A C A T G A C T G A T G C C T G A T C A G
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--TGTTGCTAGGCAG
NCCGTTGCTANGNGN
 A C G T A C G T C A G T A C T G A C G T C G A T C T A G A G T C G A C T C T G A C A T G A C T G A T G C C T G A T C A G
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:3
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:TGTTGCTAGGCAG--
KGTTGCTAGGMAACA
 C A G T A C T G A C G T C G A T C T A G A G T C G A C T C T G A C A T G A C T G A T G C C T G A T C A G A C G T A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--TGTTGCTAGGCAG
NNCGTTGCTATGGNN
 A C G T A C G T C A G T A C T G A C G T C G A T C T A G A G T C G A C T C T G A C A T G A C T G A T G C C T G A T C A G
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.86
Offset:-6
Orientation:reverse strand
Alignment:------TGTTGCTAGGCAG----
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G A C G T C G A T C T A G A G T C G A C T C T G A C A T G A C T G A T G C C T G A T C A G A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:TGTTGCTAGGCAG--
-GTTGCCATGGNAAC
 C A G T A C T G A C G T C G A T C T A G A G T C G A C T C T G A C A T G A C T G A T G C C T G A T C A G A C G T A C G T
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TGTTGCTAGGCAG-
NGTTGCCATGGCAA
 C A G T A C T G A C G T C G A T C T A G A G T C G A C T C T G A C A T G A C T G A T G C C T G A T C A G A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TGTTGCTAGGCAG-
GGTTGCCATGGCAA
 C A G T A C T G A C G T C G A T C T A G A G T C G A C T C T G A C A T G A C T G A T G C C T G A T C A G A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGTTGCTAGGCAG--
KGTTGCCATGGCAAC
 C A G T A C T G A C G T C G A T C T A G A G T C G A C T C T G A C A T G A C T G A T G C C T G A T C A G A C G T A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGTTGCTAGGCAG--
CGGTTGCCATGGCAAC
 A C G T C A G T A C T G A C G T C G A T C T A G A G T C G A C T C T G A C A T G A C T G A T G C C T G A T C A G A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C