Information for 12-CCAGCACCCGGGACAG (Motif 17)

A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C G A T C A C T G A C T G A C T G G T C A A G T C C G T A C T A G
Reverse Opposite:
A G T C A C G T A C T G A C G T A G T C A G T C T G A C C T A G A C T G A C T G A C G T A C T G A G T C A C G T A C T G C T A G
p-value:1e-9
log p-value:-2.247e+01
Information Content per bp:1.911
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.0 +/- 23.6bp
Average Position of motif in Background37.2 +/- 17.2bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-CCAGCACCCGGGACAG----
TTCAGCACCATGGACAGCGCC
 A C G T A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C G A T C A C T G A C T G A C T G G T C A A G T C C G T A C T A G A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:CCAGCACCCGGGACAG----
TCAGCACCATGGACAGCTCC
 A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C G A T C A C T G A C T G A C T G G T C A A G T C C G T A C T A G A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CCAGCACCCGGGACAG
------CCAGGAACAG
 A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C G A T C A C T G A C T G A C T G G T C A A G T C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCAGCACCCGGGACAG
TCAGNGAGCGTGAC--
 A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C G A T C A C T G A C T G A C T G G T C A A G T C C G T A C T A G
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C A C G T A C G T

TCF3/MA0522.2/Jaspar

Match Rank:5
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CCAGCACCCGGGACAG
--AACACCTGCT----
 A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C G A T C A C T G A C T G A C T G G T C A A G T C C G T A C T A G
A C G T A C G T G T C A T C G A A G T C G C T A A T G C A T G C G C A T T C A G A G T C C A G T A C G T A C G T A C G T A C G T

TCF4/MA0830.1/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CCAGCACCCGGGACAG
--CGCACCTGCT----
 A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C G A T C A C T G A C T G A C T G G T C A A G T C C G T A C T A G
A C G T A C G T G A T C T C A G G A T C C G T A A T G C T A G C C G A T C T A G A T G C C G A T A C G T A C G T A C G T A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:7
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CCAGCACCCGGGACAG
--TGCCCTGAGGGCA-
 A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C G A T C A C T G A C T G A C T G G T C A A G T C C G T A C T A G
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:8
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CCAGCACCCGGGACAG
--TGCCCNNAGGGCA-
 A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C G A T C A C T G A C T G A C T G G T C A A G T C C G T A C T A G
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:9
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCACCCGGGACAG
NNTNCGCACCTGTNGAN-
 A C G T A C G T A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C G A T C A C T G A C T G A C T G G T C A A G T C C G T A C T A G
G C A T C A G T G C A T A G C T G A T C T C A G G T A C C T G A A T G C T A G C A C G T A C T G A C G T C A T G C A T G G T C A A G C T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.49
Offset:2
Orientation:forward strand
Alignment:CCAGCACCCGGGACAG
--NNCACCTGNN----
 A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C G A T C A C T G A C T G A C T G G T C A A G T C C G T A C T A G
A C G T A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T A C G T A C G T