Information for 12-CGTGATTCTT (Motif 9)

A G T C A C T G A C G T A C T G C G T A A C G T A C G T A G T C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G C G T A C G T A A C G T A G T C C G T A A G T C A C T G
p-value:1e-3
log p-value:-8.916e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.25%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.8 +/- 31.8bp
Average Position of motif in Background31.5 +/- 3.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mitf/MA0620.1/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CGTGATTCTT
NCACGTGACN---
 A C G T A C G T A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A G T C A C G T A C G T
A G T C G T A C C G T A A G T C T C A G C A G T A C T G T G C A A G T C G A T C A C G T A C G T A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:2
Score:0.62
Offset:-9
Orientation:forward strand
Alignment:---------CGTGATTCTT-
ACTYKNATTCGTGNTACTTC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A G T C A C G T A C G T A C G T
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CGTGATTCTT
NCGTGACN---
 A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A G T C A C G T A C G T
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CGTGATTCTT
CNGTGATTTN-
 A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A G T C A C G T A C G T
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T

MLX/MA0663.1/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CGTGATTCTT
ATCACGTGAT----
 A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A G T C A C G T A C G T
C T G A A C G T A G T C C T G A A G T C C A T G C G A T C A T G C T G A G A C T A C G T A C G T A C G T A C G T

JUND/MA0491.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGTGATTCTT-
GGTGACTCATC
 A G T C A C T G A C G T A C T G C G T A A C G T A C G T A G T C A C G T A C G T A C G T
C T A G T C A G A C G T A C T G C G T A A T G C A C G T G T A C C G T A A G C T T A G C

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:7
Score:0.60
Offset:-10
Orientation:reverse strand
Alignment:----------CGTGATTCTT--
NTNNTNGTCACGTGACNNNTNC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
C T A G G C A T C T G A A G C T C A G T T C A G T A C G C A G T G T A C C T G A A G T C T C A G G A C T A C T G G T C A G A T C A G C T T G A C G C A T C G A T G A T C G A T C

FOS/MA0476.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGTGATTCTT-
TGTGACTCATT
 A G T C A C T G A C G T A C T G C G T A A C G T A C G T A G T C A C G T A C G T A C G T
C A G T T A C G A C G T A C T G C G T A A T G C A C G T A G T C C G T A A G C T A G C T

Sox5/MA0087.1/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CGTGATTCTT-
----ATTGTTA
 A G T C A C T G A C G T A C T G C G T A A C G T A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

SREBF2(var.2)/MA0828.1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CGTGATTCTT
GTCACGTGAT----
 A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A G T C A C G T A C G T
T C A G G C A T T A G C C T G A A T G C T A C G G A C T A T C G C G T A A G C T A C G T A C G T A C G T A C G T