Information for 5-GCATGCWGTGTGG (Motif 5)

A C T G A G T C G T C A A C G T A C T G A T G C C G T A C T A G A C G T A T C G A C G T A C T G C A T G
Reverse Opposite:
G T A C A G T C G T C A A T G C C G T A A G T C C G A T A T C G A G T C C G T A A C G T A C T G A G T C
p-value:1e-12
log p-value:-2.767e+01
Information Content per bp:1.838
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif18.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets45.2 +/- 29.8bp
Average Position of motif in Background42.0 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GCATGCWGTGTGG
TNTCCTGCTGTGNNG
 A C G T A C G T A C T G A G T C G T C A A C G T A C T G A T G C C G T A C T A G A C G T A T C G A C G T A C T G C A T G
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCATGCWGTGTGG
TCNCCTGCTGNGNNN
 A C G T A C G T A C T G A G T C G T C A A C G T A C T G A T G C C G T A C T A G A C G T A T C G A C G T A C T G C A T G
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCATGCWGTGTGG
NNTCCTGCTGTGNNN
 A C G T A C G T A C T G A G T C G T C A A C G T A C T G A T G C C G T A C T A G A C G T A T C G A C G T A C T G C A T G
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCATGCWGTGTGG--
NNNANTGCAGTGCNNTT
 A C G T A C G T A C T G A G T C G T C A A C G T A C T G A T G C C G T A C T A G A C G T A T C G A C G T A C T G C A T G A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCATGCWGTGTGG
-CCTGCTGAGH--
 A C T G A G T C G T C A A C G T A C T G A T G C C G T A C T A G A C G T A T C G A C G T A C T G C A T G
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCATGCWGTGTGG
CCCCCTGCTGTG---
 A C G T A C G T A C T G A G T C G T C A A C G T A C T G A T G C C G T A C T A G A C G T A T C G A C G T A C T G C A T G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GCATGCWGTGTGG
TBGCACGCAA-----
 A C G T A C G T A C T G A G T C G T C A A C G T A C T G A T G C C G T A C T A G A C G T A T C G A C G T A C T G C A T G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCATGCWGTGTGG-
TCAGNGAGCGTGAC
 A C T G A G T C G T C A A C G T A C T G A T G C C G T A C T A G A C G T A T C G A C G T A C T G C A T G A C G T
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GCATGCWGTGTGG
GGCCYCCTGCTGDGH--
 A C G T A C G T A C G T A C G T A C T G A G T C G T C A A C G T A C T G A T G C C G T A C T A G A C G T A T C G A C G T A C T G C A T G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCATGCWGTGTGG
TGCGTG--------
 A C G T A C T G A G T C G T C A A C G T A C T G A T G C C G T A C T A G A C G T A T C G A C G T A C T G C A T G
G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T