Information for 13-AGCACCTACWTTASGC (Motif 15)

C G T A A C T G A G T C G T C A A G T C G A T C G A C T C G T A G T A C C G T A G A C T G A C T C G T A A T C G C A T G A G T C
Reverse Opposite:
T A C G G A T C A T G C A C G T C G T A C T G A C G A T C A T G A C G T C T G A C T A G A C T G A C G T A C T G G T A C A C G T
p-value:1e-11
log p-value:-2.562e+01
Information Content per bp:1.741
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.8 +/- 23.9bp
Average Position of motif in Background38.9 +/- 10.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGCACCTACWTTASGC
AAGCACTTAA-------
 A C G T C G T A A C T G A G T C G T C A A G T C G A T C G A C T C G T A G T A C C G T A G A C T G A C T C G T A A T C G C A T G A G T C
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGCACCTACWTTASGC
ACCACTTAA-------
 C G T A A C T G A G T C G T C A A G T C G A T C G A C T C G T A G T A C C G T A G A C T G A C T C G T A A T C G C A T G A G T C
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGCACCTACWTTASGC
ACCACTTAA-------
 C G T A A C T G A G T C G T C A A G T C G A T C G A C T C G T A G T A C C G T A G A C T G A C T C G T A A T C G C A T G A G T C
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGCACCTACWTTASGC
CGAAGCACACAAAATA---
 A C G T A C G T A C G T C G T A A C T G A G T C G T C A A G T C G A T C G A C T C G T A G T A C C G T A G A C T G A C T C G T A A T C G C A T G A G T C
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGCACCTACWTTASGC
-GCACGTACCC-----
 C G T A A C T G A G T C G T C A A G T C G A T C G A C T C G T A G T A C C G T A G A C T G A C T C G T A A T C G C A T G A G T C
A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C A C G T A C G T A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AGCACCTACWTTASGC
TGACACCT---------
 A C G T C G T A A C T G A G T C G T C A A G T C G A T C G A C T C G T A G T A C C G T A G A C T G A C T C G T A A T C G C A T G A G T C
G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ISL2/MA0914.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGCACCTACWTTASGC
-GCACTTAA-------
 C G T A A C T G A G T C G T C A A G T C G A T C G A C T C G T A G T A C C G T A G A C T G A C T C G T A A T C G C A T G A G T C
A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGCACCTACWTTASGC
SNGCACCTGCHS-----
 A C G T C G T A A C T G A G T C G T C A A G T C G A T C G A C T C G T A G T A C C G T A G A C T G A C T C G T A A T C G C A T G A G T C
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGCACCTACWTTASGC
GGACCACCCACG------
 A C G T A C G T C G T A A C T G A G T C G T C A A G T C G A T C G A C T C G T A G T A C C G T A G A C T G A C T C G T A A T C G C A T G A G T C
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T A C G T A C G T A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGCACCTACWTTASGC
-GCACGTAY-------
 C G T A A C T G A G T C G T C A A G T C G A T C G A C T C G T A G T A C C G T A G A C T G A C T C G T A A T C G C A T G A G T C
A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T