Information for 9-ATCCATTAGCATT (Motif 12)

C G T A C G A T G A T C A T G C C G T A G C A T G C A T C G T A A T C G G T A C G T C A A C G T G A C T
Reverse Opposite:
C T G A T G C A C A G T C A T G A T G C A C G T C G T A C G T A C G A T A T C G C T A G G C T A G A C T
p-value:1e-11
log p-value:-2.639e+01
Information Content per bp:1.678
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.43%
Number of Background Sequences with motif125.0
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets55.8 +/- 27.6bp
Average Position of motif in Background48.0 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VENTX/MA0724.1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:ATCCATTAGCATT
ACCGATTAG----
 C G T A C G A T G A T C A T G C C G T A G C A T G C A T C G T A A T C G G T A C G T C A A C G T G A C T
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T A C G T A C G T A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ATCCATTAGCATT
AAACMATTAN----
 A C G T C G T A C G A T G A T C A T G C C G T A G C A T G C A T C G T A A T C G G T A C G T C A A C G T G A C T
T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:ATCCATTAGCATT
-CTCATTTGCATW
 C G T A C G A T G A T C A T G C C G T A G C A T G C A T C G T A A T C G G T A C G T C A A C G T G A C T
A C G T A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ATCCATTAGCATT
-BTVATTWGCATA
 C G T A C G A T G A T C A T G C C G T A G C A T G C A T C G T A A T C G G T A C G T C A A C G T G A C T
A C G T A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ATCCATTAGCATT
-BCMATTAG----
 C G T A C G A T G A T C A T G C C G T A G C A T G C A T C G T A A T C G G T A C G T C A A C G T G A C T
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:6
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:ATCCATTAGCATT
----ATTTGCATA
 C G T A C G A T G A T C A T G C C G T A G C A T G C A T C G T A A T C G G T A C G T C A A C G T G A C T
A C G T A C G T A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A

BARX1/MA0875.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:ATCCATTAGCATT
-GCAATTAG----
 C G T A C G A T G A T C A T G C C G T A G C A T G C A T C G T A A T C G G T A C G T C A A C G T G A C T
A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T

HOXB3/MA0903.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ATCCATTAGCATT
ACTAATTAGC---
 C G T A C G A T G A T C A T G C C G T A G C A T G C A T C G T A A T C G G T A C G T C A A C G T G A C T
C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ATCCATTAGCATT
GGCCATTAAC---
 C G T A C G A T G A T C A T G C C G T A G C A T G C A T C G T A A T C G G T A C G T C A A C G T G A C T
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATCCATTAGCATT
AAAAACCATTAAGG--
 A C G T A C G T A C G T C G T A C G A T G A T C A T G C C G T A G C A T G C A T C G T A A T C G G T A C G T C A A C G T G A C T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G A C G T A C G T