Information for 25-GCAKTGGAWTSATGCA (Motif 35)

T C A G G T A C C G T A A C T G C A G T A C T G A T C G C G T A C G T A A C G T A T G C C G T A C G A T A C T G A T G C G T C A
Reverse Opposite:
A C G T A T C G G T A C C G T A C G A T A T C G G T C A C G A T A C G T A T G C G T A C G T C A G T A C C G A T A C T G A G T C
p-value:1e-8
log p-value:-1.909e+01
Information Content per bp:1.746
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.6 +/- 20.7bp
Average Position of motif in Background38.2 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1/MA0070.1/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GCAKTGGAWTSATGCA
---TTTGATTGATGN-
 T C A G G T A C C G T A A C T G C A G T A C T G A T C G C G T A C G T A A C G T A T G C C G T A C G A T A C T G A T G C G T C A
A C G T A C G T A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GCAKTGGAWTSATGCA-
-----TGAATTATGCAT
 T C A G G T A C C G T A A C T G C A G T A C T G A T C G C G T A C G T A A C G T A T G C C G T A C G A T A C T G A T G C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:3
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GCAKTGGAWTSATGCA
-----TGATTGATGA-
 T C A G G T A C C G T A A C T G C A G T A C T G A T C G C G T A C G T A A C G T A T G C C G T A C G A T A C T G A T G C G T C A
A C G T A C G T A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GCAKTGGAWTSATGCA----
----NNCATTCATTCATNNN
 T C A G G T A C C G T A A C T G C A G T A C T G A T C G C G T A C G T A A C G T A T G C C G T A C G A T A C T G A T G C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

PB0144.1_Lef1_2/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCAKTGGAWTSATGCA-
-NNANTGATTGATNTTN
 T C A G G T A C C G T A A C T G C A G T A C T G A T C G C G T A C G T A A C G T A T G C C G T A C G A T A C T G A T G C G T C A A C G T
A C G T G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.56
Offset:8
Orientation:forward strand
Alignment:GCAKTGGAWTSATGCA--
--------MTGATGCAAT
 T C A G G T A C C G T A A C T G C A G T A C T G A T C G C G T A C G T A A C G T A T G C C G T A C G A T A C T G A T G C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GCAKTGGAWTSATGCA
-----TGATTTATGGC
 T C A G G T A C C G T A A C T G C A G T A C T G A T C G C G T A C G T A A C G T A T G C C G T A C G A T A C T G A T G C G T C A
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GCAKTGGAWTSATGCA
----ATGATKGATGRC
 T C A G G T A C C G T A A C T G C A G T A C T G A T C G C G T A C G T A A C G T A T G C C G T A C G A T A C T G A T G C G T C A
A C G T A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCAKTGGAWTSATGCA
NNTGTGGATTSS----
 T C A G G T A C C G T A A C T G C A G T A C T G A T C G C G T A C G T A A C G T A T G C C G T A C G A T A C T G A T G C G T C A
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G A C G T A C G T A C G T A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:GCAKTGGAWTSATGCA--
--------ATGATGCAAT
 T C A G G T A C C G T A A C T G C A G T A C T G A T C G C G T A C G T A A C G T A T G C C G T A C G A T A C T G A T G C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T