Information for 7-GGATTAGTCA (Motif 27)

A C T G A T C G C G T A A C G T A C G T C G T A C T A G A C G T G T A C C G T A
Reverse Opposite:
A C G T C A T G G T C A G A T C A C G T C G T A C G T A C G A T T A G C G T A C
p-value:1e-10
log p-value:-2.412e+01
Information Content per bp:1.848
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.87%
Number of Background Sequences with motif66.3
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets57.1 +/- 34.8bp
Average Position of motif in Background51.3 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GSC/MA0648.1/Jaspar

Match Rank:1
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--GGATTAGTCA
NNGGATTAGN--
 A C G T A C G T A C T G A T C G C G T A A C G T A C G T C G T A C T A G A C G T G T A C C G T A
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:2
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----GGATTAGTCA--
TGAAGGGATTAATCATC
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G C G T A A C G T A C G T C G T A C T A G A C G T G T A C C G T A A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

GSC2/MA0891.1/Jaspar

Match Rank:3
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--GGATTAGTCA
GNGGATTAGN--
 A C G T A C G T A C T G A T C G C G T A A C G T A C G T C G T A C T A G A C G T G T A C C G T A
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GGATTAGTCA
GGGATTANN--
 A C G T A C T G A T C G C G T A A C G T A C G T C G T A C T A G A C G T G T A C C G T A
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GGATTAGTCA
RGGATTAR---
 A C G T A C T G A T C G C G T A A C G T A C G T C G T A C T A G A C G T G T A C C G T A
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:6
Score:0.79
Offset:-6
Orientation:forward strand
Alignment:------GGATTAGTCA-
TGAACCGGATTAATGAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G C G T A A C G T A C G T C G T A C T A G A C G T G T A C C G T A A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:7
Score:0.79
Offset:-6
Orientation:forward strand
Alignment:------GGATTAGTCA-
TGAACCGGATTAATGAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G C G T A A C G T A C G T C G T A C T A G A C G T G T A C C G T A A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GGATTAGTCA
GGATTAGC--
 A C T G A T C G C G T A A C G T A C G T C G T A C T A G A C G T G T A C C G T A
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:9
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GGATTAGTCA
GGGATTAA---
 A C G T A C T G A T C G C G T A A C G T A C G T C G T A C T A G A C G T G T A C C G T A
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:10
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GGATTAGTCA
NGGATTAA---
 A C G T A C T G A T C G C G T A A C G T A C G T C G T A C T A G A C G T G T A C C G T A
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T